Sorry Doug, I don't understand, I just have the cluster.mgh file with the MonteCarlo simulation results, is an .mgh file with a big significant cluster ( mc-z.abs.sig.cluster.mgh).
Is there a way to create a label for each of the significant clusters?
thanks again and sorry if the question is too trivial! Gari
On Thu, Aug 15, 2013 at 7:32 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
Give it the annotation (.annot) file
On 08/15/2013 01:26 PM, Garikoitz Lerma-Usabiaga wrote:
Thanks Doug! Could you give me an example please? I cannot get it to work, with this command I get a zero label...
mri_annotation2label --subject fsaverage --hemi lh --annotation lh.mc-z.abs.sig.cluster.mgh --labelbase lh.mc_mycluster
thanks again! Gari
On Thu, Aug 15, 2013 at 4:44 PM, Douglas Greve <greve@nmr.mgh.harvard.edu<mailto: greve@nmr.mgh.harvard.**edu greve@nmr.mgh.harvard.edu>> wrote:
Hi Gari, you can use mri_annotation2label doug On 8/14/13 3:00 PM, Garikoitz Lerma-Usabiaga wrote:Hi list, we have a cluster that survived the Monte Carlo simulation for thickness, and we would like to obtain more data from that exact cluster (volume for example), is it possible to automatically create a label from that cluster? If I use mri_binarize or mri_cor2label is not working (I understand that the clusters are not stored as individual vertexes in the .mgh file but I don't know what the format is. Thanks in advance! Gari PD: I am on a VPN and tksurfer is not working for manually creating a label with the contour of the cluster. ______________________________**_________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.**harvard.edu Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurferhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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