Hi Doug,
Thanks for the reply. From the command line the command 3dvolreg.afni returned the following error:
3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol: afni_ncerr
-Yuhong
On Thu, Mar 21, 2013 at 12:08 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu
wrote:
Hi Yuhong, What happens when you run 3dvolreg.afni from the command line without any args? doug
On 03/21/2013 12:38 PM, Y.V. Jiang wrote:
Hi Doug,
I was running preproc-sess in the newly released freesurfer-5.2.0. The command I used was:
preproc-sess -sf sessid -df sessdir -fsd bold -surface fsaverage lhr -mni305 -fwhm 6 -per-run
The program failed with the following errors:
3dvolreg.afni -verbose -dfile 004/fmcpr.mcdat -1Dmatrix_save 004/fmcpr.mat -base 004/tmp.mc-afni2.29239/tempvol.nii.gz -prefix 004/tmp.mc-afni2.29239/outvol.nii.gz 004/tmp.mc-afni2.29239/invol.nii.gz 3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol: afni_ncerr ERROR: 3dvolreg.afni Invalid null command.
I have the file 3dvolreg.afni in $FREESURFER_HOME/bin. There is another file of the same name under afni/bin. Preproc-sess is relying on the version in $FREESURFER_HOME/bin.
Do you know what the problem is? Should I replace freesurfer's copy of 3dvolreg.afni with AFNI's copy of 3dvolreg.afni?
Thanks.
-Yuhong
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