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Hi Yujing, Yes, it was. I tried another subject, which worked fine on another computer and still faced the same issue.
On Fri, Dec 15, 2023 at 1:29 PM Huang, Yujing YHUANG43@mgh.harvard.edu wrote:
Your recon-all was killed – “Command terminated by signal 9”.
Was your VM VirtualBox up and running the whole time?
Best,
Yujing
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Fargol Rezayaraghi *Sent:* Friday, December 15, 2023 3:15 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] mri_error_no_clear_message
External Email - Use Caution *Hi FreeSurfer Team,
I hope this email finds you well.
I'm trying to use a T1 image to get the aparc+aseg and wmparc nifti files.
I was using this command: recon-all -s Subject1 -i T1.nii - all -notal -check ( I used recon-all -s Subject1 -i T1.nii - all first, and after getting Talairach error, I added -nota -check at the end).
I'm getting following messages without clear error number: recon-all -s Subject1 exited with ERRORS at Thu Dec 14 21:18:02 EST 2023
For more details, see the log file /home/developer/Desktop/freesurfer/7.2.0/subjects/Subject1/scripts/recon-all.log To report a problem, see *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1AEcm_r5UUiX4kxKXd7jilZSm-nuzHwNbgCqIR__XVAT6par... https://secure-web.cisco.com/1VaUiiJBvyxGrkK7RMVSALXxKuPjIlHjckO6T7FIKANdYMFKjkwGpUWsXJwbdYazqagcAqKMlx3hXarBMZhFiJbfNKaEmqLzWZY6xjSA0qOiqllqzVYA90_0PMgu2jW87Fm_JWKG5X4DLYsDnRi52SjCpTpCN28FLNbqIIFnmmoS6DaCBdKzESV6kAmZKzamLO90as6I0Ky4gr6XsAi12Rl4etvpZlo2peBEU3uWyX_dS8GcFC6aTnE7S6vwIGhjyLP8biFmmv87u7-l0sVay4I7nid3vWpv54Xe45eZIQFGsMR-XUQ9J3DTSTgtSzSuVABlFs2lIXALjBrSNkA60gw/https%3A%2F%2Furldefense.com%2Fv3%2F__http%3A%2F%2Fsecure-web.cisco.com%2F1cQznhKx0XPPZTJqsioLqCSeP_2I8A9nJBXfsYwGFwxBXmD7RKRMw6kJmasSt1kAVp1tCqVQIurRZP1ILpcB8zCphuDfC33ZrWCnEEM0UyCkUQ68sHTdVSrxdZHVfYGMhhkNH8lAuG8DZXqdGtv1K-PKnPqBhTp1Ui_GDs6jgZlw8V857cEz0W9pSlxkxTbuH7OOl4JzgLWABGJ9dIX-ET2sOtFoqAy_84Lb6yRzqYgqmvW7LsNBM5TgMiCap9DnItZnw4q1L8-QvO-hGF1VSkPwRzSg2c3In5QTT9Hr_DSVyg9PbERLA2rxo_6FtmskDiW-vYccwKPsbbYN_m1zKcg%2Fhttp*3A*2F*2Fsurfer.nmr.mgh.harvard.edu*2Ffswiki*2FBugReporting__;JSUlJSU!!K-Hz7m0Vt54!mpXlItw3HksNG5picpS2hzkrDQ5Ir2h6k8c_YjAD3GnAWY3G3m9aAlZiKX8aCDeVydSXc1JwuzhSRTkavKBjVOI$
The version of the freesurfer: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b
My platform is ubuntu 18_04_06 on Oracle VM VirtualBox
I've attached the log file.
--
Kind Regards,
*Fargol R. Araghi (Rezayaraghi)*
Ph.D. Candidate, University of Washington
Department of Mechanical Engineering
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1X15DWTD5tCmN1ZNlfv3E_cxAMJCuLmjXOo8ThTYOUozt2FT... https://secure-web.cisco.com/1SMHN6ZREuuN-zZNcvHSusSpNjRyEaTBmA0teRrDx8aGvFBfWi9JiQwXJnAbg-3Jl77YCxvsDFJGdCP2xHH-xH5GVgcfU1B2TDbxmGMPwnBSnfqSWBQus0ndokNO0-5HEUPer3AIC_h4IiKE5iIMviwKII9BsvUjR1aOYWczF9cPHoHvUh3pTjRy5teIawp6oDoboRi4HINolPlqHzSPl9AtYTfUbOZ2cttgzOwLCDbjZVReOagI6xkaoS8AM1ErVplPci6uDa0VARIa9wXHh_CLB2TwrXYnyARdR0SC8EB9Ptd_XlkAAQ7ofeIHGrnaU4tjgOOPZPwye9ggRFVgJCA/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fsecure-web.cisco.com%2F1OE6aYFeTkmWM7FGsUCe4yHngfS6aQZieqg2uFkxfDu0quqKdRIFbD_f0xBwsUxcZw_17mtWE6rsfMAp8GcFWW6emf_5CITLoC22EaCXQva91Nob_g90awow6SxgIM3DBvjwJPYMQAawIz3WwH6xNJiIYGpJ9DPL1v4YGBFF3uydsqG6v57s_aUws079xLWNk2mlbU0U-WpvOGTleTbJQf9LVd322VXdtfdveMq4mn1w_wA7hOvEtTcu5VCGyNOxfrKPOTY2DvaZsEhF7YW11JYzyjiSgHl7p1SB-TZqoMh41B3OaF5vqAMyXsDhrk6UoT0cPKD8Is9zNQVkT9c31kw%2Fhttps*3A*2F*2Fwww.kurtlab.com*2F__;JSUlJQ!!K-Hz7m0Vt54!mpXlItw3HksNG5picpS2hzkrDQ5Ir2h6k8c_YjAD3GnAWY3G3m9aAlZiKX8aCDeVydSXc1JwuzhSRTkah59Y7dY$ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
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