Dear Sara, You can download Freesurfer 7, install it side by side with FreeSurfer 6, and run the thalamic module on the already reconned subjects. Cheers, /E
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Sara PONTICORVO sponticorvo@unisa.it Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Thursday, April 8, 2021 at 03:22 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] thalamic nuclei segmentation
External Email - Use Caution Hi Freesurfer experts, I processed ~150 subjects with freesurfer v6 (recon-all) and I was wondering if it is possible to use the script for the segmentation of the thalamic nuclei on these subjects. I know this part of the processing is now integrated in the v7 of freesurfer, but I'm thinking if there is a way to avoid re-run all the reconstruction with the new version. I looked in the wiki page, and it seems that there was a way to integrate the scripts in the fs-v6, but I don't find any downloadable package or scripts.
Thanks for your help, Sara
-- Sara Ponticorvo, PhD Department of Medicine Surgery and Dentistry University of Salerno