Hello FS experts,
I am currently running an analysis for pial_lgi between control and patient group. But when I try to run the analysis using qdec for Right Hemisphere (rh),I get the following error with one particular subject
Error in Analyze: Couldn't open /Applications/freesurfer/subjects/HC122/surf/rh.pial_lgi.fwhm0.fsaverage.mgz or .mgh file.
However,the analysis works fine for Left Hemisphere (lh) without errors.
I tried running the command recon-all -s HC122 -qcache -measure pial_lgi -hemi rh
But output was #@# Qdec Cache rh pial_lgi fsaverage Mon May 30 20:19:32 IST 2016 INFO: File rh.pial_lgi does not exist! Skipping creation of smoothed data for rh.pial_lgi
But trying to run '-localGI' did not create 'surf/rh.pial_lgi' btu it creates 'surf/lh.pial_lgi' I checked the euler number for the surface it is 2.
Any suggestions to correct the error is highly appreciated .
Regards, Vikas Bandalli