External Email - Use Caution
Hi! I am having difficulties setting the timewindow parameter in mkanalysis-sess in Freesurfer v5.3. I am trying to use 80 (data acquired with MION), but the parameter does not seem to affect analysis.info, where it is always 40. Is it possible to force a different timewindow? Below is some info from analysis.info. Thanks, Caspar
# FSBUILD freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 # MKAVERSION $Id: mkanalysis-sess,v 1.64.2.5 2013/01/22 21:52:07 greve Exp $ # MKACMD /neuro_tools/freesurfer/fsfast/bin/mkanalysis-sess -fsd bold -native -timeoffset -2/2 -event-related -paradigm xxxx.para -nconditions 4 -TR 2 -gammafit 0 8 -gammaexp 0.3 *-timewindow 80* -refeventdur 0.5 -polyfit 2 -hpf 0.0109 -analysis xxxx -funcstem xxxx -runlistfile xxxx.list -nuisreg motion.dat 6 -tpef tpef.dat -acfbins 14 -acffwhm 0 -mask xxxx -force
analysis xxxx mcstem fmc funcstem xxxx fsd bold runlistfile xxxx.list TR 2 RegDOF 6 PerSession 1 RawSpace volume native mask xxxx RawFWHM 0 RawSTC none UseB0DC 0 ApplySubCortMask 1 inorm 100 acfbins 14 fixacf 1 acffwhm 0 acfsvd 0 designtype event-related tpexclude tpef.dat nskip 0 polyfit 2 HPFCutoffHz 0.0109 HeteroGCor 0 nconditions 4 parname xxxx.para RefEventDur 0.5 *timewindow 40.000000* prestim 0 TER 0.050000 gamma 0 8 0.3 0 stimulusdelay -2/2 Condition 1 Condition01 Condition 2 Condition02 Condition 3 Condition03 Condition 4 Condition04 nuisreg motion.dat 6