Hi, I am also having the same problems. Was this ever resolved?
I run freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.5 on ubuntu hardy 2.6.24-18.
thanks, mishkin
On Wed, Sep 10, 2008 at 12:55 PM, David Qixiang Chen <qixiang.chen@gmail.com
wrote:
Hi, I'm running freesurfer in Ubuntu hardy 2.6.24-19
I've ran into a problem with loading data tables in qdec. I've followed the instructions in tutorial 2a and created associated data tables, but qdec always returned the error: ERROR: QdecProject::VerifySubjects: Couldn't find subject '<sdi>' in SUBJECTS_DIR sh: Syntax error: Bad fd number
I've even tried to load the tutorial example files, and had the same errors returned back to me, please assist:
Here's the error output: Loading data table /media/STORAGE/buckner_data/tutorial_subjs/group_analysis_tutorial/qdec/qdec.table.dat... Number of columns: 189 fsid column: 1 Number of factors: 188 Number of subjects: 40 Reading discrete factor levels from config file /media/STORAGE/buckner_data/tutorial_subjs/group_analysis_tutorial/qdec/gender.levels...'Male','Female', done.
Data table /media/STORAGE/buckner_data/tutorial_subjs/group_analysis_tutorial/qdec/qdec.table.dat loaded. sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '004' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '008' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '017' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '021' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '032' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '039' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '040' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '045' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '049' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '067' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '073' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '074' in SUBJECTS_DIR
Thanks
- David Qixiang Chen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer