Thank you very much, Dear Andrew! for your expert advise. I really appreciated. Its worked.
Best Regards Manoj
On Tue, Jan 16, 2018 at 10:39 PM, Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
Hi Manoj,
This probably has to do with SIP being enabled, which blocks libraries stored in /usr. I would suggest disabling SIP and rerunning to see if that fixes things: http://osxdaily.com/2015/10/05/disable-rootless-system- integrity-protection-mac-os-x/
best, Andrew
On Jan 16, 2018, at 2:59 AM, Manoj Kumar vermanojk@gmail.com wrote:
Hello Dear FreeSurfer Experts,
I am trying to run "recon-all -s subject -localGI" command on my Mac bash terminal. I am getting following error.
I am using using Freesurfer V 6.0 and running on MacOS High Sierra (version 10.13)
I also run the istallation update :"sudo -E fs_update" as per suggestion on the release note but still getting same error.
Any help to resolve this issue would be greatly appreciated. Thank you so much for all your help and support.
Best regards Manoj
Manojs-iMac:cases manojkumar$ export SUBJECTS_DIR=/Users/ manojkumar/fs_dmd_process/cases/HRUDAY/bert/surf Manojs-iMac:cases manojkumar$ cd $SUBJECTS_DIR Manojs-iMac:surf manojkumar$ mris_compute_lgi --i lh.pial ================= rm -Rf /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/ surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/ surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /Users/manojkumar/fs_dmd_ process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh. pial/lh.pial.filled.mgz ================= dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/. ./lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/. ./lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
Abort ERROR: mris_fill -c -r 1 lh.pial /Users/manojkumar/fs_dmd_ process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz failed! Manojs-iMac:surf manojkumar$ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.