Thank you very much, Dear Andrew! for your expert advise. I really appreciated. Its worked.

Best Regards Manoj

On Tue, Jan 16, 2018 at 10:39 PM, Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:

Hi Manoj,

This probably has to do with SIP being enabled, which blocks libraries stored in /usr. I would suggest disabling SIP and rerunning to see if that fixes things: http://osxdaily.com/2015/10/05/disable-rootless-system- integrity-protection-mac-os-x/

best, Andrew

On Jan 16, 2018, at 2:59 AM, Manoj Kumar vermanojk@gmail.com wrote:

Hello Dear FreeSurfer Experts,

I am trying to run "recon-all -s subject -localGI" command on my Mac bash terminal. I am getting following error.

I am using using Freesurfer V 6.0 and running on MacOS High Sierra (version 10.13)

I also run the istallation update :"sudo -E fs_update" as per suggestion on the release note but still getting same error.

Any help to resolve this issue would be greatly appreciated. Thank you so much for all your help and support.

Best regards Manoj

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Manojs-iMac:cases manojkumar$ export SUBJECTS_DIR=/Users/ manojkumar/fs_dmd_process/cases/HRUDAY/bert/surf Manojs-iMac:cases manojkumar$ cd $SUBJECTS_DIR Manojs-iMac:surf manojkumar$ mris_compute_lgi --i lh.pial ================= rm -Rf /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/ surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/ surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /Users/manojkumar/fs_dmd_ process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh. pial/lh.pial.filled.mgz ================= dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/. ./lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/. ./lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib

Abort ERROR: mris_fill -c -r 1 lh.pial /Users/manojkumar/fs_dmd_ process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz failed! Manojs-iMac:surf manojkumar$ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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