Hi Alan, Can you please send the the command line that you used to generate the results, and a listing of the files in the mri directory of any subject you’ve analyzed? Cheers, /Eugenio
Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
On 22 Nov 2016, at 16:48, Alan Francis <alandarkenergy@gmail.commailto:alandarkenergy@gmail.com> wrote:
Hi Eugenio -
Hope all is well with you at UCL. I have the run the subfields algorithm on a set of subjects using Freesurfer 6.0. All the brains were processed without much fuss. However, when I ran the following:
quantifyHippocampalSubfields.sh DM_125 Cannabis_HSF.txt
It yielded nothing.
Can you please help me?
Thanks,
Alan
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Alan N. Francis PhD Instructor - Imaging Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edumailto:ezra_wegbreit@brown.edu afrancis@mclean.harvard.edumailto:afrancis@mclean.harvard.edu
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