Re: [Freesurfer] Error Sourcing Freesurfer

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Hi Avnish,

Here is the output:

pwd

/homes/2/it090

ls /usr/local/freesurfer

6.0.0 fs-stable6-env-autoselect

6.0.1 fs-stable710-env-autoselect 7.0.0 fs-stable711-env-autoselect 7.0.0.backup fs-stable-env-autoselect 7.1.0 infant 7.1.0.backup infant-dev 710_small infant-dev-4347fc8 7.1.1 infant-dev-4a14499 7.1.1.backup infant-dev-ath 7.1.1-dev-freeze infant-dev.backup 7.1.1-dev-freeze.backup ldd.dev.20220424_0520.out.1 7.1.1_docker lib 7.1.1-infant nfs.list.1 7.1-tracula-beta nfs.list.1.su 7.1-tracula-beta.backup nmr-7.0.0-env 7.2.0 nmr-7.1.0-env 7.2.0-beta nmr-7.1.1-dev-freeze-env 7.2.0-beta.backup nmr-7.1.1-env 7.2.0.previous nmr-dev-env 7.3.0 nmr-dev-env-bash 7.3.0-beta nmr-stable50-env 7.3.0-beta.previous nmr-stable53-env 7.3.0.previous nmr-stable60-env 7.3.1 nmr-stable6-env 7.3.1.previous nmr-stable6-env-bash 7.3.2 nmr-stable710-env 7.3.2.previous nmr-stable710-env-bash 7.3.3 nmr-stable711-env 7.3.3.previous nmr-stable711-env-bash build_20210928 PLATFORM build-stamp.txt sclimbic cleanInstall.sh sclimbic-linux-20210725.tar.gz curley sclimbic-osx-20210725.tar.gz dev stable dev_20210626_0713 stable5_0_0 dev_20210629_0249 stable5_3_0 dev_20211123_1753 stable6 dev.20211125_1330 stable6_0_0 dev_20211128_0609 stable6.bak dev_20220406_debug stable7.1.0 dev.20221207 stable7.1.1 dev.backup STAGE dev-exp subjects dev.previous text expand trctrain fs-dev-env-autoselect vtk_BACKUP fsenv

Thanks for your help!

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Kumar, Avnish Sent: Tuesday, May 2, 2023 11:13 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Error Sourcing Freesurfer

External Email - Use Caution Could you post the ouitput of these two commands: pwd ls /usr/local/freesurfer Best, Avnish ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Turco, Isabella <ITURCO@mgh.harvard.edumailto:ITURCO@mgh.harvard.edu> Sent: Tuesday, May 2, 2023 10:55 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Error Sourcing Freesurfer

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Hello,

When trying to source Freesurfer version 7.1.1 using the command below, I’m getting the error “No such file or directory.”

source /usr/local/freesurfer/fs-stable711-env-autoselect

Any guidance on potential solutions would be much appreciated!

Thanks,

Isabella

Isabella Turco, B.S.

Senior Clinical Research Coordinator

Massachusetts General Hospital

Department of Anesthesia, Critical Care and Pain Medicine

617-643-2896

iturco@mgh.harvard.edumailto:iturco@mgh.harvard.edu