Dear FS-Experts,
I am trying to run Freesurfer on a Ubuntu 7.10 (Gutsy Gibbon) system and unfortunately I encounter the same problem that Gonzalo Sanchez Benavides and also William McGarry described in earlier emails. Copying the new fsgdfPlot.tcl into the $FREESURFER_HOME/lib/tcl directory stopped the "FsgdfPlot_IsWindowShowing" error but did not save me from getting the other two error messages:
/ERROR: In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWApplication.cxx, line 1182 vtkKWQdecApp (0x8817de0): TclTk error: invalid command name "vtkTemp349" invalid command name "vtkTemp349" while executing "vtkTemp349 FocusInCallback" (command bound to event)
ERROR: In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWApplication.cxx, line 1182 vtkKWQdecApp (0x8817de0): TclTk error: invalid command name "vtkTemp347" invalid command name "vtkTemp347" while executing "vtkTemp347 FinishEditing" (command bound to event)
/ Following the advice given in earlier emails I get:
/-------- freesurfer-Linux-rh9-stable-pub-v4.0.2 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer FSFAST_HOME /usr/local/freesurfer/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /home/christian/Promotion/Tutorial/group_analysis_tutorial MNI_DIR /usr/local/freesurfer/mni christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial> source $FREESURFER_HOME/bin/tcl_setup christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial> source $FREESURFER_HOME/bin/vtk_setup christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial> source $FREESURFER_HOME/bin/kww_setup christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial> ldd $FREESURFER_HOME/bin/qdec.bin linux-gate.so.1 => (0xffffe000) libtix8.1.8.4.so => /usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.so (0xb7f0a000) libtk8.4.so => /usr/local/freesurfer/lib/tcltktixblt/lib/libtk8.4.so (0xb7e4a000) libtcl8.4.so => /usr/local/freesurfer/lib/tcltktixblt/lib/libtcl8.4.so (0xb7db0000) libGLU.so.1 => /usr/lib/libGLU.so.1 (0xb7d1f000) libGL.so.1 => /usr/lib/libGL.so.1 (0xb7c89000) libX11.so.6 => /usr/lib/libX11.so.6 (0xb7b98000) libXmu.so.6 => /usr/lib/libXmu.so.6 (0xb7b82000) libverdict.so.1.2 => /usr/local/freesurfer/lib/vtk/lib/libverdict.so.1.2 (0xb7b53000) libvtkGraphics.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkGraphics.so.5.1 (0xb7535000) libvtkfreetype.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkfreetype.so.5.1 (0xb74d3000) libvtkmetaio.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkmetaio.so.5.1 (0xb744d000) libvtkpng.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkpng.so.5.1 (0xb742d000) libvtkzlib.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkzlib.so.5.1 (0xb741d000) libvtkImaging.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkImaging.so.5.1 (0xb70ed000) libvtkFiltering.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkFiltering.so.5.1 (0xb6e2e000) libvtkCommon.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkCommon.so.5.1 (0xb6c65000) libvtksys.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtksys.so.5.1 (0xb6c2c000) libvtkexoIIc.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkexoIIc.so.5.1 (0xb6bea000) libvtkNetCDF.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkNetCDF.so.5.1 (0xb6bb6000) libvtkVolumeRendering.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkVolumeRendering.so.5.1 (0xb66b1000) libvtkRendering.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkRendering.so.5.1 (0xb63d0000) libvtkftgl.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkftgl.so.5.1 (0xb63c5000) libvtkWidgets.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkWidgets.so.5.1 (0xb6255000) libvtkHybrid.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkHybrid.so.5.1 (0xb5faa000) libvtkIO.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkIO.so.5.1 (0xb5b3a000) libvtkDICOMParser.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkDICOMParser.so.5.1 (0xb5b1b000) libvtkVolumeRenderingTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkVolumeRenderingTCL.so.5.1 (0xb5aec000) libvtkRenderingTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkRenderingTCL.so.5.1 (0xb5a30000) libvtkFilteringTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkFilteringTCL.so.5.1 (0xb593e000) libvtkWidgetsTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkWidgetsTCL.so.5.1 (0xb58ca000) libvtkHybridTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkHybridTCL.so.5.1 (0xb5869000) libvtkGraphicsTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkGraphicsTCL.so.5.1 (0xb5756000) libvtkImagingTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkImagingTCL.so.5.1 (0xb56e7000) libvtkIOTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkIOTCL.so.5.1 (0xb5661000) libvtkCommonTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkCommonTCL.so.5.1 (0xb55d4000) libKWWidgets.so => /usr/local/freesurfer/lib/KWWidgets/lib/KWWidgets/libKWWidgets.so (0xb5097000) libz.so.1 => /usr/lib/libz.so.1 (0xb5082000) libcrypt.so.1 => /lib/tls/i686/cmov/libcrypt.so.1 (0xb5054000) libdl.so.2 => /lib/tls/i686/cmov/libdl.so.2 (0xb504f000) libpthread.so.0 => /lib/tls/i686/cmov/libpthread.so.0 (0xb5037000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0xb4f7d000) libm.so.6 => /lib/tls/i686/cmov/libm.so.6 (0xb4f58000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb4f4d000) libc.so.6 => /lib/tls/i686/cmov/libc.so.6 (0xb4e03000) libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0xb4d0f000) libGLcore.so.1 => /usr/lib/libGLcore.so.1 (0xb4377000) libnvidia-tls.so.1 => /usr/lib/tls/libnvidia-tls.so.1 (0xb4375000) libXext.so.6 => /usr/lib/libXext.so.6 (0xb4367000) libXau.so.6 => /usr/lib/libXau.so.6 (0xb4364000) libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0xb435e000) libXt.so.6 => /usr/lib/libXt.so.6 (0xb430d000) libSM.so.6 => /usr/lib/libSM.so.6 (0xb4305000) libICE.so.6 => /usr/lib/libICE.so.6 (0xb42ed000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0xb42cd000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0xb4278000) libexpat.so.0 => /usr/lib/libexpat.so.0 (0xb4258000) /lib/ld-linux.so.2 (0xb7f46000) christian-laptop:~/Promotion/Tutorial/group_analysis_tutorial>
/But still the error messages do not want to disappear... Any idea where my mistake might be?
I am not sure if this is of any relevance but I have added "setenv XLIB_SKIP_ARGB_VISUALS 1" to my SetUpFreeSurfer.csh as without it I was not able to open Qdec at all.
Best wishes and thanks a lot in advance, Christian