Dear Dr. Yeo,
Thanks a lot for sending this information. I tried to view the parcels using colortable but somehow I do not see postfix in FreeView window. Could you please send me the command line how can I load the parcels on freeview with associated colortable? I would really appreciate your help.
(1). In the mean time, I found this paper: Aberrant cerebellar connectivity in motor and association networks in schizophrenia ( https://doi.org/10.3389/fnhum.2015.00134) In this paper, in figure 1, details of cortical areas are given for 17 networks. I was wondering if I can use these areas and report in my 7 network analysis e.g. for default mode network in 7 network atlas, can I report all the areas in networks 14, 15, 16 and 17 in 17 network atlas. Similarly, for frontoparietal network in 7 network atlas, can I report all the areas in control networks 11, 12 and 13 in 17 network atlas, and so on for other networks. If I can do that, then what would be the best citation for that?
(2). Or I can't do like I described in step #1 above and I can report only the areas which you referred in zip folder, which I specified in my previous email.
Thanks a lot for your time and help.
On Wed, Oct 18, 2017 at 6:06 PM, Thomas Yeo ythomas@csail.mit.edu wrote:
Hi Martin,
Those postfix are based on anatomical location. If you load the parcels on freeview with the associated colortable, you should be able to infer what the postfix are referring to.
Off the top of my head (but you should double check by loading on freeview):
FrOper = frontal operculum
PFCl = Prefrontal Cortex Lateral
FEF = frontal eye fields
ParOper = parietal operculum
TempOcc = temporal occipital
PHC = parahippocampal complex
PFCmp = I think mp stands for medial posterior, but I am not super
sure, you probably want to visualize this and double check.
Thanks, Thomas
On Thu, Oct 19, 2017 at 1:16 AM, Martin Juneja mj70481@gmail.com wrote:
Dear Dr. Yeo,
Thanks a lot for your reply. Actually, I have already analyzed the effect of treatment on these 7 functional networks. I just want to report what are the areas which constitute each of these network.
Somehow in the reference you sent, I could not find name of each regions of interest which are part of these networks. In the zip folder you sent, I found following information. Is there a way I can still get full name of ROIs e.g. here I do not know FrOper, PFCI etc.
I would really appreciate any help.
Thanks !
*Network 1:* 1 7Networks_LH_Vis 120 18 134 0
*Network 2:* 2 7Networks_LH_SomMot 70 130 180 0
*Network 3:* 3 7Networks_LH_DorsAttn_Post 0 118 14 0 4 7Networks_LH_DorsAttn_FEF 0 118 15 0 5 7Networks_LH_DorsAttn_PrCv 0 119 14 0
*Network 4:* 6 7Networks_LH_SalVentAttn_ParOper 196 58 250 0 7 7Networks_LH_SalVentAttn_TempOcc 196 58 251 0 8 7Networks_LH_SalVentAttn_FrOper 196 59 250 0 9 7Networks_LH_SalVentAttn_PFCl 196 59 251 0 10 7Networks_LH_SalVentAttn_Med 197 58 250 0
*Network 5:* 11 7Networks_LH_Limbic_OFC 220 248 164 0 12 7Networks_LH_Limbic_TempPole 220 248 165 0
*Network 6:* 13 7Networks_LH_Cont_Par 230 148 34 0 14 7Networks_LH_Cont_Temp 230 148 35 0 15 7Networks_LH_Cont_PFCd 230 149 34 0 16 7Networks_LH_Cont_PFCl 230 149 35 0 17 7Networks_LH_Cont_OFC 231 148 34 0 18 7Networks_LH_Cont_PFCv 231 148 35 0 19 7Networks_LH_Cont_pCun 231 149 34 0 20 7Networks_LH_Cont_Cing 231 149 35 0 21 7Networks_LH_Cont_PFCmp 230 148 33 0
*Network 7:* 22 7Networks_LH_Default_Par 205 62 78 0 23 7Networks_LH_Default_Temp 205 62 79 0 24 7Networks_LH_Default_PFC 205 63 78 0 25 7Networks_LH_Default_PCC 205 63 79 0 26 7Networks_LH_Default_PHC 206 62 78 0
On Wed, Oct 18, 2017 at 6:44 AM, Thomas Yeo ythomas@csail.mit.edu wrote:
Hi Martin,
We have previously split the networks into 114 regions: https://www.dropbox.com/s/yj1gbpmpgho7wtm/Yeo_JNeur ophysiol11_SplitLabels.zip?dl=0 . See Figure 1 in the first reference below. If you decide to use these regions, please kindly cite the following papers:
- Yeo BTT, Tandi J, Chee MWL. Functional connectivity during rested
wakefulness predicts vulnerability to sleep deprivation. Neuroimage 111:147-158, 2015
- Krienen FM, Yeo BTT, Buckner RL. Reconfigurable state-dependent
functional coupling modes cluster around a core functional architecture. Philosophical Transactions of the Royal Society B, 369:20130526, 2014
Thanks, Thomas
On Wed, Oct 18, 2017 at 3:48 AM, Martin Juneja mj70481@gmail.com wrote:
Hi experts,
I am using Yeo atlas (7 networks) in my analysis. Where can I find name of all the regions involved in each of these 7 networks in Yeo atlas?
Thanks.
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