Re: [Freesurfer] bad freesurfer segmentation

Hi Doety

yes, that looks pretty bad. Can you tell us about the acquisition? What resolution/field strength/scan type was it?

If you upload the subject we will take a look

cheers Bruce On Wed, 9 Jul 2014, Doety Prins wrote:

...

Dear freesurfer experts,

I experienced some problems with the segmentation of my T1 scans, as both the white surface and the pial surface are placed incorrectly (see attached images). This seems to me to be a too big difference with what it should look like, that I think could not be fixed with the standard troubleshooting strategies.

Do you have any solutions for this? Is it for instance possible to make changes to the recon-all script to shift the surfaces?

Thanks in advance,

Doety