Hello all,
While running recon-all for a subject, I ran into the following error message:
*reading aseg from /Users/IngvalsonLab/Desktop/avgseg_seg_test/mri/aseg.auto_noCCseg.mgz*
*reading norm from /Users/IngvalsonLab/Desktop/avgseg_seg_test/mri/norm.mgz*
*0 voxels in left wm, 0 in right wm, xrange [-1, 257]*
*searching rotation angles z=[-7 7], y=[83 97]*
*searching scale 1 Z rot 6.8 global minimum found at slice 0.0, rotations (90.00, -0.00)*
*final transformation (x=0.0, yr=90.000, zr=-0.000):*
*-0.000 0.000 1.000 128.000;*
*-0.000 1.000 -0.000 128.000;*
*-1.000 0.000 0.000 128.000;*
* 0.000 0.000 0.000 1.000;*
*Segmentation fault*
*Darwin dhcp-165-124-23-248.prevmed.northwestern.edu 12.4.0 Darwin Kernel Version 12.4.0: Wed May 1 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 x86_64*
*recon-all -s avgseg_seg_test exited with ERRORS at Mon Aug 19 13:32:28 CDT 2013*
* *
I don't know if this error is directly related to the actual brain segmentation, but recon-all was run with a different gca atlas. The command was:
recon-all -gca atlas.gca -all -s <subjID>
My best guess is that the .gca file is the source of the problem, but I am not sure why recon-all would make it to the final transformation and then throw an error.
Any ideas?
Thanks in advance.
MP