Hi Bruce,
Indeed norm.mgz isn't empty but doesn't look well (truncated and warped).
Is this bug fixed in the v6 beta release ?
If this is the case : 1) Would you advise me to try on the v6 ? 2) Should I so relaunch all recon-all process on my subjects computed with v5.3 and work only with the v6 beta ?
Best regards, Matthieu
2015-12-09 15:55 GMT+01:00 Bruce Fischl fischl@nmr.mgh.harvard.edu:
Hi Matthieu
this might be a bug that is fixed in 6.0. Can you cehck the input to mri_cc (norm.mgz) and make sure it is not empty? In older versions if the skull stripping failed and generated an empty norm.mgz/aseg.auto_noCCseg.mgz the mri_cc code would hang.
cheers Bruce
On Wed, 9 Dec 2015, Matthieu Vanhoutte wrote:
Dear FS epxerts,
I have launched a recon-all process on a subject. Unfortunately, I tried
two times but the process get stucked at the same step
without error.
Please found the recon-all.log associated attached to this mail.
Thanks in advance for helping !
Best regards, Matthieu
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.