Hi Bruce,
Here is the command that I tried and the resulting output/error message:
fsuser@xubuntu-VirtualBox:~$ export TUTORIAL_DATA=C:\tutorial data fsuser@xubuntu-VirtualBox:~$ export SUBJECTS_DIR=$TUTORIAL_DATA/buckner_data/tutorial_subjs fsuser@xubuntu-VirtualBox:~$ cd $SUBJECTS_DIR bash: cd: C:tutorial/buckner_data/tutorial_subjs: No such file or directory fsuser@xubuntu-VirtualBox:~$ ^C fsuser@xubuntu-VirtualBox:~$
Sincerely,
Jason Ledesma Staff Research Associate Phone: 1(424)571-7755 E-mail: jason.ledesma@labiomed.orgmailto:jason.ledesma@labiomed.org
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl fischl@nmr.mgh.harvard.edu Sent: Wednesday, August 30, 2017 1:24:12 PM To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer Preliminary Questions
Hi Jason
in general it is much easier for us if you can cut and paste text into the email. Pictures are useful for showing things in the data and such
cheers Bruce On Wed, 30 Aug 2017, Ledesma, Jason wrote:
Hi Bruce,
Thank you for your quick response. Attached are photos in number order which should help to explain my situation. The first three photos depict the tutorial data as they are downloaded into my computer. Photo 4 illustrates the version of Freesurfer that I am using. Photos 5 and 6 express how the downloaded tutorial data folder has been shared to Freesurfer. Photo 7 illustrates an example of the commands I have used. I have tried other pathways as well but am still unsure which the proper command should be. Unix is in fact new to me. Let me know if you require any other details. Looking forward to hearing your thoughts.
Sincerely,
Jason Ledesma Staff Research Associate Phone: 1(424)571-7755 E-mail: jason.ledesma@labiomed.org
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl fischl@nmr.mgh.harvard.edu Sent: Wednesday, August 30, 2017 12:10:24 PM To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer Preliminary Questions Hi Jason
can you elaborate about what you mean by you "cannot interact with the data"?
In general, please send us the full command you ran and all its screen output including whatever errros you encountered
cheers Bruce On Wed, 30 Aug 2017, Ledesma, Jason wrote:
To whom it may concern,
I am to attend the upcoming Freesurfer course session in Boston, and I would like to ask a few preliminary questions. I am currently attempting to run Freesurfer 5.3 on a windows unit via the Oracle VM VirtualBox Manager. I have tried to follow the instructions of the tutorial thus far, but am having trouble properly downloading
the
tutorial data into Freesurfer (the data I am attempting to acquire can be found at http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData_freeview). I have tried setting up a shared folder and placing the data in a "Machine Folder", but I still cannot interact with the data. Do you know why this may be? I see that a license key must first be obtained in some instances; perhaps this is the reason there are issues. Also, what is the best way to download the most recent version of Freesurfer on windows? Thank you.
Sincerely,
Jason Ledesma Staff Research Associate Phone: 1(424)571-7755 E-mail: jason.ledesma@labiomed.org
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