You have to run recon-all all the way through and then run the subfield scripts separately.
On 4/17/2020 12:21 PM, Douglas N. Greve wrote:
None! You have to run it all the way through to the end and then run them from the command line.
On 4/17/2020 11:40 AM, Billah, Tashrif wrote:
Hi all,
Which of the three autorecons makes use of https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields%C2%A0flags? autorecon1, 2 , or 3?
My goal is to use the flag specifically with one of the three and not with recon-all in general as shown in the above page.
I do understand that the new version of the commands are https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmy...
Best, Tashrif
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