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Good afternoon,
I am following up on my question regarding the GUI for TKregister2 and TKregister2_Cmld not opening.
Is there another way to open the GUI?
Thank you kindly for your help,
isabelle
From: Isabelle Deschamps Isabelle.Deschamps@GeorgianCollege.ca Date: Thursday, March 10, 2022 at 14:52 To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Tkregister2 not opening GUI Good afternoon,
I am trying to verify the registration and for some reason the GUI is not opening.
I am using a Macbook Pro running macOS Montery with a 2.4 Gz Quad-Core Intel Core i5
I have Freesurfer version: maOS-7.2.0
I do not get an error when I run TKregister2 or TKregister_cmld
This is the output that I get without the GUI opening
No target volume specified, assuming FreeSurfer orig volume.
target volume orig
movable volume (null)
reg file (null)
LoadVol 0
ZeroCRAS 1
7.2.0
Diagnostic Level -1
% % % % % % % % avi2talxfm
talairach.xfm ---------------------
1.00857 0.02020 -0.00990 -0.12365;
-0.01789 1.03251 0.24795 -28.10577;
0.02556 -0.30660 1.20913 3.54973;
0.00000 0.00000 0.00000 1.00000;
INFO: loading target /Volumes/RestingState/fMRI/fMRI/Freesurfer/S0010_FS/mri/orig.mgz
Zeroing CRAS of target
new xfm -----------------
1.00857 0.02020 -0.00990 1.93629;
-0.01789 1.03251 0.24795 -11.46406;
0.02556 -0.30660 1.20913 -50.28331;
0.00000 0.00000 0.00000 1.00000;
---------------------
Ttarg: --------------------
-1.00000 0.00000 0.00000 128.00000;
-0.00000 0.00000 1.00000 -128.00000;
0.00000 -1.00000 0.00000 128.00000;
0.00000 0.00000 0.00000 1.00000;
INFO: loading movable /Applications/freesurfer/7.2.0/average/mni305.cor.mgz
Tmov: --------------------
-1.00000 0.00000 0.00000 128.00000;
0.00000 0.00000 1.00000 -128.00000;
0.00000 -1.00000 0.00000 128.00000;
0.00000 0.00000 0.00000 1.00000;
mkheaderreg = 0, float2int = 0
---- Input registration matrix --------
1.00857 0.02020 -0.00990 1.93629;
-0.01789 1.03251 0.24795 -11.46406;
0.02556 -0.30660 1.20913 -50.28331;
0.00000 0.00000 0.00000 1.00000;
Determinant 1.33659
subject = S0010_FS
RegMat ---------------------------
1.00857 0.02020 -0.00990 1.93629;
-0.01789 1.03251 0.24795 -11.46406;
0.02556 -0.30660 1.20913 -50.28331;
0.00000 0.00000 0.00000 1.00000;
UnZeroing CRAS for fstal output xfm
Any help would be greatly appreciated.
Isabelle