New subject: FW: Tkregister2 not opening GUI

10 Mar 2022

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Hi Isabelle,

It’s been a couple of years since I ran FreeSurfer on a Mac, but I
also have had this issue before and it was due to the macOS. I
don’t know if anything has changed recently but if not then the
only solution would be to try to install an older macOS that will
support 32bit apps.

Best,

Nathan

*From: *freesurfer-bounces@nmr.mgh.harvard.edu
<freesurfer-bounces@nmr.mgh.harvard.edu>
<mailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of
Isabelle Deschamps <Isabelle.Deschamps@georgiancollege.ca>
<mailto:Isabelle.Deschamps@georgiancollege.ca>
*Date: *Wednesday, 16 March 2022 at 19:20
*To: *freesurfer@nmr.mgh.harvard.edu
<freesurfer@nmr.mgh.harvard.edu>
<mailto:freesurfer@nmr.mgh.harvard.edu>
*Subject: *[Freesurfer] FW: Tkregister2 not opening GUI

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Good afternoon,

I am following up on my question regarding the GUI for TKregister2
and TKregister2_Cmld not opening.

Is there another way to open the GUI?

Thank you kindly for your help,

isabelle

*From: *Isabelle Deschamps <Isabelle.Deschamps@GeorgianCollege.ca>
<mailto:Isabelle.Deschamps@GeorgianCollege.ca>
*Date: *Thursday, March 10, 2022 at 14:52
*To: *freesurfer@nmr.mgh.harvard.edu
<freesurfer@nmr.mgh.harvard.edu>
<mailto:freesurfer@nmr.mgh.harvard.edu>
*Subject: *Tkregister2 not opening GUI

Good afternoon,

I am trying to verify the registration and for some reason the GUI
is not opening.

I am using a Macbook Pro running macOS Montery with a 2.4 Gz
Quad-Core Intel Core i5

I have Freesurfer version: maOS-7.2.0

I do not get an error when I run TKregister2 or TKregister_cmld

This is the output that I get without the GUI opening

No target volume specified, assuming FreeSurfer orig volume.

targetvolume orig

movable volume (null)

reg file(null)

LoadVol0

ZeroCRAS1

7.2.0

Diagnostic Level -1

% % % % % % % % avi2talxfm

talairach.xfm ---------------------

1.008570.02020-0.00990-0.12365;

-0.017891.032510.24795-28.10577;

0.02556-0.306601.209133.54973;< /span>

0.000000.000000.000001.00000;

INFO: loading target
/Volumes/RestingState/fMRI/fMRI/Freesurfer/S0010_FS/mri/orig.mgz

Zeroing CRAS of target

new xfm -----------------

1.008570.02020-0.009901.93629;< /span>

-0.017891.032510.24795-11.46406;

0.02556-0.306601.20913-50.28331;

0.000000.000000.000001.00000;

---------------------

Ttarg: --------------------

-1.000000.000000.00000128.00000;

-0.000000.000001.00000-128.00000;

0.00000-1.000000.00000128.00000;

0.000000.000000.000001.00000;

INFO: loading movable
/Applications/freesurfer/7.2.0/average/mni305.cor.mgz

Tmov: --------------------

-1.000000.000000.00000128.00000;

0.000000.000001.00000-128.00000;

0.00000-1.000000.00000128.00000;

0.000000.000000.000001.00000;

mkheaderreg = 0, float2int = 0

---- Input registration matrix --------

1.008570.02020-0.009901.93629;< /span>

-0.017891.032510.24795-11.46406;

0.02556-0.306601.20913-50.28331;

0.000000.000000.000001.00000;

Determinant 1.33659

subject = S0010_FS

RegMat ---------------------------

1.008570.02020-0.009901.93629;< /span>

-0.017891.032510.24795-11.46406;

0.02556-0.306601.20913-50.28331;

0.000000.000000.000001.00000;

UnZeroing CRAS for fstal output xfm

Any help would be greatly appreciated.

Isabelle

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