Re: [Freesurfer] LGI Topological Defect

Hi Tara try: recon-all -s <subject> -randomness -all

Jon

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Tara Miskovich miskovi2@uwm.edu Sent: Friday, August 22, 2014 12:07 PM To: Freesurfer support list Subject: [Freesurfer] LGI Topological Defect

Hi all,

I am getting an error that seems common for people running LGI where it crashes due to a topological defect.

I have run mris_euler_number and everything looks fine. Plus, I went through each slice and made sure the surfaces looked good.

Any advice on any other steps I can take? I have already tried rerunning recon-all.

Thank you! Tara