try the slicer software. there are options to do what you want directly with FS data
--- On Tue, 3/17/09, Douglas N Greve greve@nmr.mgh.harvard.edu wrote: From: Douglas N Greve greve@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] 3D visualization of subcortical volumes To: "Alexa Nardelli" alexan@ualberta.ca Cc: freesurfer@nmr.mgh.harvard.edu Date: Tuesday, March 17, 2009, 12:50 PM
You can use the FS MRIread.m command to read in mgz volumes.
doug
Alexa Nardelli wrote:
Hi,
I have used FreeSurfer volumetrics to obtain various volumes of some
subcortical structures. I would like to obtain a 3D image of each of these subcortical structures. I have tried importing the volumes into Matlab, however Matlab doesn't recognize the mgz file. Any suggestions on how I could go about doing this?
Thanks,
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