Hi Saurabh
this is all done for you in recon-all (not tkmedit). Why not just run it?
Bruce On Mon, 10 Mar 2014, Saurabh Thakur wrote:
Hello freesurfer Expert, Steps for measuring cortical thickness are in tkmedit :
Intensity normalisation,
Registration to Talairach space,
Skull stripping,
Segmentation of white matter,
Tesselation of the WM boundary,
Smoothing of the tesselated surface and automatic topology correction
Can u help me to step no 5 and 6. How to do this steps.
Thanks, Saurabh Thakur,