Hi Saurabh

this is all done for you in recon-all (not tkmedit). Why not just run it?

Bruce On Mon, 10 Mar 2014, Saurabh Thakur wrote:

Hello freesurfer Expert, Steps for measuring cortical thickness are in tkmedit :

1. Intensity normalisation,

2. Registration to Talairach space,

3. Skull stripping,

4. Segmentation of white matter,

5. Tesselation of the WM boundary,

6. Smoothing of the tesselated surface and automatic topology correction

Can u help me to step no 5 and 6. How to do this steps.

Thanks, Saurabh Thakur,