Dear Bruce,
Thank you very much for your suggestion, but I am afraid that I still don't quite understand you.
In order to make it simple, suppose I have two files, Barba001.IMA and Barba002.IMA, coming directly from the scanner.
Now if I enter *recon-all -s Barba -i Barba001.IMA* from the command line, I am only able to find *001.mgz* in the Barba/mri/orig. Aren't I supposed to to find 001.mgz and 002.mgz?
Thank you so much!
Sincerely, Ye
On Mon, Jun 24, 2013 at 5:41 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Ye
you only need to give it a single file from each run and it will find the rest. The only time you use -i more than once is if you acquired more than 1 T1-weighted volume. Definitely don't give it all the files that make up the same volume
cheers Bruce
On Mon, 24 Jun 2013, ye tian wrote:
Dear David,
I wonder whether there is a short cut for recon-all -s Barbara -i /path_to_data/scan1.dicom -i /path_to_data/scan2.dicom ... -i /path_to_data/scan100.dicom
Recon-all -i takes only a single file as an input. A typical user, however, has hundreds of files for a particular subject. For example, the directory Barbara may have 100 scans. Therefore, the above command is necessary to include all the scans.
I understand that I can write loops to a text file and then copy and paste to command line. However, I wonder whether there is a simpler way to input several files or even a directory to recon-all.
Thank you very much!
Sincerely, Ye
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