I don't know where you went wrong. You can try to regenerate just that file with cd $SUBJECTS_DIR/subject/mri mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz delete the old wm.mgz first
On 4/21/2022 9:48 PM, HYE JUNG YOUN wrote:
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Hi,
Then I get :
Error: mghRead(/Applications/Freesurfer/7.2.0/subjects/211025/1270_1301/mri/wm.mgz, -1): read error
Should I go through recon all process for all files I have ?
Can you perhaps tell me where I have possibly gone wrong?
I simply just used the code I always used for freeview then this happened. I’d like to avoid making same mistakes I might have made.
Thanks for your help!
*From:*freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *On Behalf Of *Douglas N. Greve *Sent:* Friday, April 22, 2022 2:59 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Failed to load MRI error
It might be that the wm.mgz file is corrupted. What happens if you run mri_info wm.mgz
On 4/18/2022 8:02 PM, HYE JUNG YOUN wrote:
* External Email - Use Caution * Hi Bruce, Do you mean that I should re-do the recon-all process? I tried to re run freeview but it did not work. And Yes I think the files have been overwritten at some point which I am trying to figure out to avoid making the same mistake in the future. However, the question is I have done the exact same process I always did to view mri files on freeview. I have set and used the same subject directory, used the same code, and etc. Here’s the code I used: Which gives me this: Then, when I check mri folder, notice the selected files have been overwritten (I think) and are shown as 0 byte in size. Can you see where I went wrong to overwrite those files? Thank you for your help. Best, H *From:*freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> <mailto:freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Fischl, Bruce *Sent:* Monday, April 18, 2022 10:35 PM *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] Failed to load MRI error Is this for a subject that you can’t load the wm.mgz for? It doesn’t show any errors. Is the wm.mgz zero length? I don’t see how those things can both be true unless you overwrote it at some point. If you haven’t manually edited this subject maybe you should just rerun it? *From:*freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *HYE JUNG YOUN *Sent:* Monday, April 18, 2022 2:44 AM *To:* 'Freesurfer support list' <freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] Failed to load MRI error * External Email - Use Caution * Hi Bruce, Please find the attached log file. Thanks. H _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/177KXi_rtP18HYBBhhrD-_-8LWtyCLOd2W44TrhMzVO8z07DC89yLCaPVxeC217TCLMuRz_l9W0gM-5vfgg2Po9kjjQOlX6-XL1-5Pbf4AOReb_JMsTDgBdXdbXq61DeY2zwJEb5QJnjuFBGJgfIHMSE2AaBQFd4_RwTGLtDH3gbJEmsG4pSdebK3KjlebZyg6vl5TcQtGEmOsCqeHFlp_Br1G9b4yWnS7qf5lDHsB_ABvqEL4tR895nBKrslbvrdK6blGAMi2kzgxutTQcD3KALsnlFtFa-uK8aThf5XSy-tHflISFYQNwKuvRjLONO8vcl52vt6OsRaL7VR5UUo4A/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
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