Hi FS experts,
We have some legacy code (in a BASH script) that uses mri_cor2label to convert what it is calling the anterior amygdala to volumetric labels. However, we get the error that these values (96 and 97) do not exist. Have the label IDs changed? We are using stable5.1. Our call looks like this:
mri_cor2label --c ${FSDIR}/${SUBJID}/mri/aseg.mgz --id 96 --l ${FSDIR}/ ${SUBJID}/label2/lh.amygdala_ant_vol.label
Does anyone know what is going on with this?
Thank you for your help,
Andrew Ward Brigham and Women's Hospital (BBNG) Massachusetts General Hospital (GRU) Athinoula A. Martinos Center for Biomedical Imaging 149 13th St., Rm 2689C Charlestown, MA 02129 Phone: 617-726-6211 Fax: 617-726-5760