Hi Andy, I don't think that we ever labeled those regions. Or did you do these by hand? If you have a label that you want to see the code for, you can load it into tkmedit like

tkmedit subject orig.mgz -aux aseg.mgz -aseg

when you click on a label, you can see its number in the aux value. doug

Andrew Ward wrote:

Hi FS experts,

We have some legacy code (in a BASH script) that uses mri_cor2label to convert what it is calling the anterior amygdala to volumetric labels. However, we get the error that these values (96 and 97) do not exist. Have the label IDs changed? We are using stable5.1. Our call looks like this:

mri_cor2label --c ${FSDIR}/${SUBJID}/mri/aseg.mgz --id 96 --l ${FSDIR}/ ${SUBJID}/label2/lh.amygdala_ant_vol.label

Does anyone know what is going on with this?

Thank you for your help,

Andrew Ward Brigham and Women's Hospital (BBNG) Massachusetts General Hospital (GRU) Athinoula A. Martinos Center for Biomedical Imaging 149 13th St., Rm 2689C Charlestown, MA 02129 Phone: 617-726-6211 Fax: 617-726-5760

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