If there is white matter that is being excluded from the white surface, then if that is fixed, the pial surface will grow out further and may include the gray matter originally excluded.
On Thu, 13 Oct 2011, Jordan Pierce wrote:
We're trying to reconstruct pial and white matter surfaces for cortical thickness analysis and sections of the gray matter are being excluded, particularly in the temporal lobes. As far as we can tell, there is no way to add this back to the pial surface...is there a solution to this problem?
Jordan Pierce
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