That doesn't sound good. Does tag 28, 30 mean the voxel size is missing, why would this be? It is a Siemens dicom from a 3T scanner - not sure which model but I can find out.
Do you have any idea why I am getting errors for some runs in the scan. info file as such?:
7 t1_mprage_tra_p2_iso_1.0 err 0 0 0 160 11147SACC000.MR.RESEARCH_NEURO.
Thanks Doug,
Caroline
On Thu, May 22, 2014 at 6:52 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
hmmm, if it does not have tag 28 30, then something is really wrong. This is a Siemens dicom, right? What scanner? doug
On 05/22/2014 06:05 PM, Caroline Lewis wrote:
Thanks Douglas. Now I am running into other errors. I ran the command:
unpacksdcmdir -src 0008 -targ 0008/mri/orig -fsfast \ ? -run 8 bold nii 001.nii
ERROR: reading
0008/11147SACC000.MR.RESEARCH_NEURO.8.1.2014.05.13.14.42.14.530.48877356.dcm
tag 28 30
Also, some of the runs in the "scan.info http://scan.info" file say "err" where it should say "ok"
Do you have any idea why I'm getting these errors?
Thanks,
Caroline
On Thu, May 22, 2014 at 4:16 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Remove the \<<NIFTI>> On 05/22/2014 03:45 PM, Caroline Lewis wrote: > Hi, > > I am trying to unpack dicom files and convert them to nifti, but am > running into an error. I ran the following command with no issue: > unpacksdcmdir -src dicomdir -targ targetdir -scanonly targetdir/scan.info <http://scan.info> <http://scan.info> > > > however, when I try to run the next command to actually unpack the data: > > unpacksdcmdir -src 0008 -targ NIFTI -fsfast \ > ? -run 7 3danat mgz 001.mgz \<<NIFTI>> > > I get the following error message: Missing name for redirect. > Thanks, > > Caroline > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
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