you can also run defect-seg, then look at the help to get an idea of how to load the defect segmentation and see whether the defect is causing the problem
On 07/26/2017 08:16 PM, Bruce Fischl wrote:
Hi Jake
usually that means that there is a topology defect that is being incorrectly fixed. If you upload the subject and point us at the voxel coords we will take a look
cheers Bruce
On Wed, 26 Jul 2017, Jake Rieke wrote:
Hello surfers,
I'm attempting to extend white and pial surfaces to encompass an unrecognized gyrus. The wm.mgz seems include the WM tissue, but the white surface does not extend to the WM boundary. I thought this might be related to an intensity normalization error and tried using control points, but that did not make a big difference in the resulting surfaces. I've attached pictures to better illustrate the problem. Thanks in advance for your help!
Best regards, Jake
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