It is whatever volume you gave as input to recon-all. If you tell us which statistics you want to regenerate for another volume we can tell you know what commands to run.
cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of ERNEST KISSI Sent: Wednesday, January 24, 2024 9:05 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Freesurfer Intensity representation
External Email - Use Caution Hi,
Please I made an initial enquiry about using freesurfer for MPF maps. The feedback was that I register the MPF maps on their corresponding T1 images using multimodal registration. I used FSL to do the multimodal registration and then use recon-all in freesurfer. Now I want to know what the intensity and the volume of the output in the aseg file represent. Is it the intensity of the MPF or the TI and MPF?