Can the recon-all for high resolution fMRI data be used in V6 beta freesurfer now? If so, how to use it?
On Jun 25, 2015, at 13:36, Allison Moreau almoreau@nmr.mgh.harvard.edu wrote:
Hi Falk and Thomas,
We are actually working on testing the -hires flag now for the v6 release. We intend to release it with v6.
-Allison
On 06/25/2015 07:09 AM, Falk Lüsebrink wrote:
Hi Thomas,
this looks like a really nice script and a lot better than my own. In the upcoming release of FreeSurfer v.6 my work-around probably is not needed anymore. However, I haven’t been able to have a look at the dev release yet and whether the standard recon-all features a flag to process high resolution data.
Best, Falk
P.S. Following your instructions one will definitely become a coffee junkie. :D
Von: freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Im Auftrag von Emmerling Thomas (PSYCHOLOGY) Gesendet: Mittwoch, 24. Juni 2015 14:35 An: freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu Betreff: [Freesurfer] recon-all pipeline for (sub-millimeter) 7T data
Hello!
I wrote a bash script some time ago to process data acquired at a sub-millimeter resolution following the nice wiki entry of Falk Lüsebrink (https://surfer.nmr.mgh.harvard.edu/fswiki/HiResRecon https://surfer.nmr.mgh.harvard.edu/fswiki/HiResRecon). I thought it might be helpful for others, too, as there are some questions about it in the mailing list archives, so here it is: https://github.com/thomastweets/freesurfer-7t-pipeline https://github.com/thomastweets/freesurfer-7t-pipeline. I am happy about any comments!
Best, Thomas
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.