Look in the subject/scripts/recon-all.cmd file of one of your subjects. You will find five mri_surf2volseg commands Use the 2nd one (the one that creates aparc+aseg.mgz) as your template and modify it to take your BA annotation and output a "BA+aseg.mgz" Use the last one ( the one that creates wmparc.mgz) as your template to create your new wmBA.mgz file, modifying it as needed. You will need to create a new LUT, but let's do that when you get there
On 2/9/2021 10:26 AM, Vinny K wrote:
External Email - Use Caution
I am using freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551
On Tue, Feb 9, 2021 at 9:55 AM Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> wrote:
which version of FS are you using? On 2/5/2021 10:02 PM, Vinny K wrote:External Email - Use Caution Hello, I'd like to obtain white matter parcellations of the Brodmann areas. I am not certain that the generated wmparc file from recon-all has this type of parcellation. I was able to convert Brodmann area label files to mgz format using mris_label2annot and mri_aparc2aseg commands. How can I obtain white matter parcellation of the individual Brodmann area volumes? Thanks, Vinny _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1XPT6Fbpm6OPt_GvWVIsGXkx3tVw-af5z2c71ybRrUDrCELV2HU14Z0pZ4zkV81_g4WPn9CmLnCrzZ9R-ws2rCm9isgUA8nxrejdZWGn2XKDXv6k5WG46ksPYWzPDnwboVj3L3_NwMkfBiBQjwNq_UbqHi2PpeqsEiiEIhA3_G_WL6FScjnmcAHmxI_QcS55a7qrxQ0LDkA4E9vVb3Jku8awsyK9L5ZVLgwa9jNBU5VzRLZ0in3ks9uRaZOv22iSaZaaIP6LExb-CfWeowwYKMg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1XPT6Fbpm6OPt_GvWVIsGXkx3tVw-af5z2c71ybRrUDrCELV2HU14Z0pZ4zkV81_g4WPn9CmLnCrzZ9R-ws2rCm9isgUA8nxrejdZWGn2XKDXv6k5WG46ksPYWzPDnwboVj3L3_NwMkfBiBQjwNq_UbqHi2PpeqsEiiEIhA3_G_WL6FScjnmcAHmxI_QcS55a7qrxQ0LDkA4E9vVb3Jku8awsyK9L5ZVLgwa9jNBU5VzRLZ0in3ks9uRaZOv22iSaZaaIP6LExb-CfWeowwYKMg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer