Hi,
Just a follow-up about the message I posted. Problem is solved. I just moved freesurfer/ outside of the Applications folder (from /Users/me/Applications/freesurfer to /Users/me/freesurfer ).
So now I can work with my macbook on subjects previously processed with another system. Probably an issue with mac os (10.11.6 ?) and copy pasting files in a subdirectory of the Applications folder…
Thanks,
Damien
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Damien MARIE http://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Damien+MARIE%22 Sat, 15 Apr 2017 06:22:31 -0700 http://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20170415 Hi,
I ran recon-all on a server where Ubuntu is running. Recently I installed separately freesurfer on a macbook, it is working (e.g. tkmedit bert), I moved my processed subjects to freesurfer/subjects on the macbook but I can not work with them. I have the below error. I changed the permission to 777, it is still not working. Now what is really strange is that, using the finder I do not see the files in freesurfer/subjects but by doing ls -l in a terminal, I can see them…
Please note that SUBJECT_DIR is defined.
Any idea is welcome.
Thank you and best,
Damiens-MacBook-Pro-2:subjects dmarie2$ tkmedit hires_ct_pp1_N4_bet_MP2RAGEcorr/ brainmask.mgz -aux T1.mgz ERROR: cannot find subject hires_ct_pp1_N4_bet_MP2RAGEcorr/ in /Applications/freesurfer/subjects or it is not readable by you
Damien _______________________________________________