Hi Linn

what was your mris_anatomical_stats commandline?

Bruce On Tue, 26 Mar 2013, Linn Mittlestein wrote:

Dear Bruce,

I first used the example command line from the wiki: mri_annotation2label --subject LW \ --hemi rh --outdir ./labels(on my own subject) and then used

mri_mergelabels -i lh.entorhinal.label -i lh.cuneus.label -o test.label

I use Freesurfer 5.1 on Linux  system. Are commands incorrect  any stage? If so could you direct please me to correct ones?

Kind Regards, Linn

On Mon, Mar 25, 2013 at 12:51 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Linn can you send us the exact command line and screen output, and also what version and software/hardware environment you are running in?

  cheers
  Bruce
  On Mon, 25 Mar 2013, Linn Mittlestein wrote:

        Dear Freesurfer experts,

        I have a question about trying to extract statistics from merged labels using
        mris_anatomical_stats. I have used
        the mri_annotation2label, and then the mri_merge label, however now when trying to do
        mris_anatomical stats, I
        get the error ; could not read input volume, eg Freesurfer cannot read the wm.mgz file. What step
        have I done
        wrong?

        Thank you very much,

        Kind Wishes, Linn

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