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Hello Thank you for the reply.

I tried to re-install the file but I have run into 2 problems. When I attempt to export $FREESURFER_HOME=$HOME/freesurfer it tells me:

* bash: export: ´#HOME/freesurfer=root/freesurfer`: not a valid identifier

When I source it, it now says it cannot find the directory and gives back the following answers:

* bash: /root/freesurfer/SetUpFreeSurfer.sh: No such file or directory

I also tried doing "source SetUpFreeSurfer.sh" from the freesurfer directory and I got this response:

* bash: /root/freesurfer/FreeSurferEnv.sh: No such file or directory

Also, When I type echo $FREESURFER_HOME I get root/freesurfer

But when I type pwd $FREESURFER_HOME it gives me c/mnt/Users/ASUS/Downloads/freesurfer

________________________________ De: fsbuild fsbuild@contbay.com Enviado: segunda-feira, 29 de maio de 2023 22:27 Para: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Cc: phbarradas@hotmail.com phbarradas@hotmail.com Assunto: Re: [Freesurfer] source freesurfer error

Try using $ instead of # to tell the linux shell to expand an environment variable, e.g., here to the path of where freesurfer was installed.

echo $FREESURFER_HOME <output will be path to where installed>

source $FREESURFER_HOME/SetUpFreeSurfer.sh

- R.

On May 29, 2023, at 07:52, Pedro henrique barradas phbarradas@hotmail.com wrote:

External Email - Use Caution

Hi everyone!

I am trying to run freesurfer on a windows machine using ubuntu but I am having trouble with the source command

When I try to source freesurfer i get the following message:

source #FREESURFERHOME/SetUpFreeSurfer.sh -bash: source: filename argument required source: usage: source filename [arguments]

Thank you very much

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