External Email - Use Caution
Hi I have been attempting to perform just the smoothing step on a series of subjects using surf2surf and I seem to be getting an error when attempting to this.
My command is as follows
mri_surf2surf --hemi lh \ --s fsaverage \ --sval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --cortex \ --tval combatlh.thickness.fwhm10.fsaverage.mgh
I get this error ERROR: Option --sval unknown
Based on other posts on the mailing list I tried specifying the src and trg subjects but still receive the following error:
mri_surf2surf --hemi lh \ --srcsubject fsaverage \ --srcsurfval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --trgsurfval combatlh.thickness.fwhm10.fsaverage.mgh
ERROR: Option --srcsubject unknown
I was wondering if you might be able to help resolve this issue
Thank you very much!
External Email - Use Caution
I'm wondering the Freesurfer version you are using.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Akansha Mahesh Naraindas Sent: Tuesday, May 30, 2023 8:22 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Smoothing with surf2surf
External Email - Use Caution Hi I have been attempting to perform just the smoothing step on a series of subjects using surf2surf and I seem to be getting an error when attempting to this.
My command is as follows
mri_surf2surf --hemi lh \ --s fsaverage \ --sval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --cortex \ --tval combatlh.thickness.fwhm10.fsaverage.mgh
I get this error ERROR: Option --sval unknown
Based on other posts on the mailing list I tried specifying the src and trg subjects but still receive the following error:
mri_surf2surf --hemi lh \ --srcsubject fsaverage \ --srcsurfval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --trgsurfval combatlh.thickness.fwhm10.fsaverage.mgh
ERROR: Option --srcsubject unknown
I was wondering if you might be able to help resolve this issue
Thank you very much!
External Email - Use Caution
Hi I have tried doing this on both version 6.0 and 7.2 and both versions show the same error
On 30 May 2023, at 14:13, Huang, Yujing YHUANG43@MGH.HARVARD.EDU wrote:
External Email - Use CautionI’m wondering the Freesurfer version you are using.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Akansha Mahesh Naraindas Sent: Tuesday, May 30, 2023 8:22 AM To: freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Smoothing with surf2surf
External Email - Use CautionHi I have been attempting to perform just the smoothing step on a series of subjects using surf2surf and I seem to be getting an error when attempting to this.
My command is as follows
mri_surf2surf --hemi lh \ --s fsaverage \ --sval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --cortex \ --tval combatlh.thickness.fwhm10.fsaverage.mgh
I get this error ERROR: Option --sval unknown
Based on other posts on the mailing list I tried specifying the src and trg subjects but still receive the following error:
mri_surf2surf --hemi lh \ --srcsubject fsaverage \ --srcsurfval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --trgsurfval combatlh.thickness.fwhm10.fsaverage.mgh
ERROR: Option --srcsubject unknown
I was wondering if you might be able to help resolve this issue
Thank you very much! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1Us8ThV3WOHtLHYjw4YQpekwagpNh87Fs0f_471CmHtWl_x... https://secure-web.cisco.com/1Us8ThV3WOHtLHYjw4YQpekwagpNh87Fs0f_471CmHtWl_xGLbFL6xRtxc-zSniB0_HU0x9lntn_F7M1BrAXxlG3sIxkj_nHP3AiNeF_wSU4Q3jtF8Nohpc5yQkDP3klwzxEoor-4QJnjfB2jfooV-Rjs6fUcbvn2L0cgJbhR-EyCq_G5pMIYznfa0UdrW_sQkEhw3DgmxOUSP_sZaQA6tpWRF3kltaVuDoTE1EM4chgiQ_Wzg1IO9PM6AYhMS1oua3kYbi8VlfNUEuGFIwEHFTG1NVDVznFscE0vPD16VuR9wD0T7AWM67dQPVMbMM4_csEUlcHY2aQ_42MK74UfbA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_Z... https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_Z... https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
External Email - Use Caution
The ‘\’ in your command is causing the error. Remove them from your command line if you have everything in the same line.
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Akansha Mahesh Naraindas Sent: Tuesday, May 30, 2023 10:14 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Smoothing with surf2surf
External Email - Use Caution Hi I have tried doing this on both version 6.0 and 7.2 and both versions show the same error
On 30 May 2023, at 14:13, Huang, Yujing <YHUANG43@MGH.HARVARD.EDUmailto:YHUANG43@MGH.HARVARD.EDU> wrote:
External Email - Use Caution
I’m wondering the Freesurfer version you are using.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Akansha Mahesh Naraindas Sent: Tuesday, May 30, 2023 8:22 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Smoothing with surf2surf
External Email - Use Caution Hi I have been attempting to perform just the smoothing step on a series of subjects using surf2surf and I seem to be getting an error when attempting to this.
My command is as follows
mri_surf2surf --hemi lh \ --s fsaverage \ --sval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --cortex \ --tval combatlh.thickness.fwhm10.fsaverage.mgh
I get this error ERROR: Option --sval unknown
Based on other posts on the mailing list I tried specifying the src and trg subjects but still receive the following error:
mri_surf2surf --hemi lh \ --srcsubject fsaverage \ --srcsurfval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --trgsurfval combatlh.thickness.fwhm10.fsaverage.mgh
ERROR: Option --srcsubject unknown
I was wondering if you might be able to help resolve this issue
Thank you very much! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/19OCeOTHLE_XfsFpVDER-bmdn_I5KWLV98O6OoxWD9WyVnx...https://secure-web.cisco.com/1Us8ThV3WOHtLHYjw4YQpekwagpNh87Fs0f_471CmHtWl_xGLbFL6xRtxc-zSniB0_HU0x9lntn_F7M1BrAXxlG3sIxkj_nHP3AiNeF_wSU4Q3jtF8Nohpc5yQkDP3klwzxEoor-4QJnjfB2jfooV-Rjs6fUcbvn2L0cgJbhR-EyCq_G5pMIYznfa0UdrW_sQkEhw3DgmxOUSP_sZaQA6tpWRF3kltaVuDoTE1EM4chgiQ_Wzg1IO9PM6AYhMS1oua3kYbi8VlfNUEuGFIwEHFTG1NVDVznFscE0vPD16VuR9wD0T7AWM67dQPVMbMM4_csEUlcHY2aQ_42MK74UfbA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1uAQq4PZpNQTBXLmPjGY8PTFrl8wBBSOqliyWb3aQpoxJja...https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1uAQq4PZpNQTBXLmPjGY8PTFrl8wBBSOqliyWb3aQpoxJja...https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
External Email - Use Caution
Yep this was it Thanks!!
On 30 May 2023, at 17:16, Huang, Yujing YHUANG43@MGH.HARVARD.EDU wrote:
External Email - Use CautionThe ‘\’ in your command is causing the error. Remove them from your command line if you have everything in the same line.
From: freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Akansha Mahesh Naraindas Sent: Tuesday, May 30, 2023 10:14 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Smoothing with surf2surf
External Email - Use CautionHi I have tried doing this on both version 6.0 and 7.2 and both versions show the same error
On 30 May 2023, at 14:13, Huang, Yujing <YHUANG43@MGH.HARVARD.EDU mailto:YHUANG43@MGH.HARVARD.EDU> wrote:
External Email - Use CautionI’m wondering the Freesurfer version you are using.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Akansha Mahesh Naraindas Sent: Tuesday, May 30, 2023 8:22 AM To: freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Smoothing with surf2surf
External Email - Use CautionHi I have been attempting to perform just the smoothing step on a series of subjects using surf2surf and I seem to be getting an error when attempting to this.
My command is as follows
mri_surf2surf --hemi lh \ --s fsaverage \ --sval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --cortex \ --tval combatlh.thickness.fwhm10.fsaverage.mgh
I get this error ERROR: Option --sval unknown
Based on other posts on the mailing list I tried specifying the src and trg subjects but still receive the following error:
mri_surf2surf --hemi lh \ --srcsubject fsaverage \ --srcsurfval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --trgsurfval combatlh.thickness.fwhm10.fsaverage.mgh
ERROR: Option --srcsubject unknown
I was wondering if you might be able to help resolve this issue
Thank you very much! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://secure-web.cisco.com/1Us8ThV3WOHtLHYjw4YQpekwagpNh87Fs0f_471CmHtWl_xGLbFL6xRtxc-zSniB0_HU0x9lntn_F7M1BrAXxlG3sIxkj_nHP3AiNeF_wSU4Q3jtF8Nohpc5yQkDP3klwzxEoor-4QJnjfB2jfooV-Rjs6fUcbvn2L0cgJbhR-EyCq_G5pMIYznfa0UdrW_sQkEhw3DgmxOUSP_sZaQA6tpWRF3kltaVuDoTE1EM4chgiQ_Wzg1IO9PM6AYhMS1oua3kYbi8VlfNUEuGFIwEHFTG1NVDVznFscE0vPD16VuR9wD0T7AWM67dQPVMbMM4_csEUlcHY2aQ_42MK74UfbA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://http://secure-web.cisco.com/1bn-Gi0720iuvBFie_P_NvbWT3D3Pllo8XuoLGfF... https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1Bex3hkuGD5k3l2guTfwYurjtiUNVI6LqpRN78oM1orxied... https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
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freesurfer@nmr.mgh.harvard.edu
-
Akansha Mahesh Naraindas -
Huang, Yujing