Hi,
Is there a way to create a subject specific overlay with an intensity value of 1 (or another constant value across the entire cortical mantle)? (I'm thinking a command like fslmaths in FSL but on the surface for each vertex).
Best, Mike
Hi Michael - Have you tried fscalc?
a.y
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Michael Kranz [mbkranz@gmail.com] Sent: Wednesday, March 29, 2017 3:03 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] fslmaths like utility for surface overlays?
Hi,
Is there a way to create a subject specific overlay with an intensity value of 1 (or another constant value across the entire cortical mantle)? (I'm thinking a command like fslmaths in FSL but on the surface for each vertex).
Best, Mike
-- Michael Kranz Graduate Research Assistant |Beckman Institute University of Illinois 314-323-1329
Hi Mike
easy enough to do in matlab.
Bruce On Wed, 29 Mar 2017, Michael Kranz wrote:
Hi, Is there a way to create a subject specific overlay with an intensity value of 1 (or another constant value across the entire cortical mantle)? (I'm thinking a command like fslmaths in FSL but on the surface for each vertex).
Best, Mike
-- Michael Kranz Graduate Research Assistant |Beckman Institute University of Illinois 314-323-1329
you can use mri_volsynth, something like
mri_volsynth --template lh.thickness --pdf const --o your.mgh
On 03/29/2017 10:05 AM, Bruce Fischl wrote:
Hi Mike
easy enough to do in matlab.
Bruce On Wed, 29 Mar 2017, Michael Kranz wrote:
Hi, Is there a way to create a subject specific overlay with an intensity value of 1 (or another constant value across the entire cortical mantle)? (I'm thinking a command like fslmaths in FSL but on the surface for each vertex).
Best, Mike
-- Michael Kranz Graduate Research Assistant |Beckman Institute University of Illinois 314-323-1329
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks!! These options do the trick
On Wed, Mar 29, 2017 at 2:03 AM, Michael Kranz mbkranz@gmail.com wrote:
Hi,
Is there a way to create a subject specific overlay with an intensity value of 1 (or another constant value across the entire cortical mantle)? (I'm thinking a command like fslmaths in FSL but on the surface for each vertex).
Best, Mike
-- Michael Kranz Graduate Research Assistant |Beckman Institute University of Illinois 314-323-1329 <(314)%20323-1329>
freesurfer@nmr.mgh.harvard.edu
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