There is nothing interactive. You can use mri_fdr. It will compute the threshold, which you can then use in freeview. It will also do the thresholding for you.

On 2/22/2021 9:25 AM, Hannah Eichhorn wrote:

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Dear all,

I am using glmfit to analyse changes in cortical thickness, but I couldn't find a description on how to perform FDR correction with FreeSurfer.

Is there a way to perform FDR correction of the statistical maps in Freeview, analogous to how it is described for tksurfer in this tutorial: *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Visualization https://secure-web.cisco.com/1znvz_BL1QGomjuCvGB8n8AR_x-UOEpT7dpaUNIadO4EOrFYwj9gOjSC0mXH0HMueTUIaS3oP28HnBOu2zrSWgtGxoNOv2p8zJ_gJmG35ua9VCohuaWY6r3EYUQqSkHw7hNFsZpjpRDVhkQvT8Iz6IGb3wSzyL1UGxnyumW5K5kSBeTCKNYudcwHiKJpvhSiaIbp3UJyW-6jWCLM_2wEOOmloOUqVywURqz8VRtnjTJWAhGFMqp6F3sX9Pb03wlPXUzKPtcUCCQztNEXaATPf8Q/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FVisualization?

Thank you very much for your help!

Best regards,

Hannah

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