try:

mri_convert lesion.mgz  lesion_FS_spance.mgz --conform -rt nearest

(rt = resample type)

cheers Bruce

On Sat, 3 Dec 2011, Navid Shiee wrote:

Hi,

I am using freesurfer to process subjects with WM lesions. My data is axial and my lesion masks are in this space. I wanted to use the lesion mask to correct wm.mgz to improve the cortical surfaces. to perform this I tried to use

mri_convert lesion.mgz  lesion_FS_spance.mgz --conform

It takes the lesion mask to the desired space, however it used linear interpolation, I need nearest neighbor interpolation. I could not find a flag for specifying the interpolation type in mri_convert.  Would you please help me with this?

Thanks,

-- Navid Shiee Ph.D. Candidate Laboratory of MEDical Image Computing (MEDIC) Image Analysis and Communication Laboratory (IACL) Johns Hopkins University