Dear Bruce and Freesurfer,
Yes, that is what I am saying! This what appears in the commandprompt when running the command:
input cache.th13.abs.sig.cluster.mgh frame 0 nErode3d 0 nErode2d 0 output thresholded.mgh Binarizing based on threshold min 1.3 max +infinity binval 1 binvalnot 0 Found 12485 values in range Counting number of voxels Found 12485 voxels in final mask mri_binarize done
Yet nothing is visible when I open the thresholded surface in tksurfer.
previous:
what was the command line and screen output of the binarization? And are you saying that pre-binarization you have locations that are above threshold, but they are set to 0 anyway?
Hi Erik, please remember to include previous correspondence. Can you upload the file for me?
https://gate.nmr.mgh.harvard.edu/filedrop2
On 01/29/2016 02:17 AM, Erik Lindberg wrote:
Dear Bruce and Freesurfer,
Yes, that is what I am saying! This what appears in the commandprompt when running the command:
input cache.th13.abs.sig.cluster.mgh frame 0 nErode3d 0 nErode2d 0 output thresholded.mgh Binarizing based on threshold min 1.3 max +infinity binval 1 binvalnot 0 Found 12485 values in range Counting number of voxels Found 12485 voxels in final mask mri_binarize done
Yet nothing is visible when I open the thresholded surface in tksurfer.
previous:
what was the command line and screen output of the binarization? And are you saying that pre-binarization you have locations that are above threshold, but they are set to 0 anyway?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Erik Lindberg