Dear Bruce and Freesurfer,
Yes, that is what I am saying! This what appears in the commandprompt when running the command:
input cache.th13.abs.sig.cluster.mgh frame 0 nErode3d 0 nErode2d 0 output thresholded.mgh Binarizing based on threshold min 1.3 max +infinity binval 1 binvalnot 0 Found 12485 values in range Counting number of voxels Found 12485 voxels in final mask mri_binarize done
Yet nothing is visible when I open the thresholded surface in tksurfer.
previous:
what was the command line and screen output of the binarization? And are you saying that pre-binarization you have locations that are above threshold, but they are set to 0 anyway?