Dear Freesurfer experts, I have a question regarding the installation/running of FreeSurfer. I have been trying to install freesurfer in a macbook pro (snow leopard) but no success. I followed the webpage from freesurfer (link below).
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PersonalLaptopSetup
But after the installations when I open the terminal nothing happens.
I also tried to launch freesurfer this way: export FREESURFER_HOME=/Applications/freesurfer source $FREESURFER_HOME/SetUpFreeSurfer.sh If I do this I get: command not found command not found command not found
Any advice on how to finally set up the software would be great help. Thank you in anticipation.Pablo
Pablo,
That page "describes how to setup a personal laptop for usage in the Freesurfer course." It does not apply to a standard freesurfer installation.
Try opening a new terminal and typing "bash" before the "export" and "source" commands you give below.
-Zeke
On 07/17/2013 10:27 AM, pablo najt wrote:
Dear Freesurfer experts,
I have a question regarding the installation/running of FreeSurfer.
I have been trying to install freesurfer in a macbook pro (snow leopard) but no success.
I followed the webpage from freesurfer (link below).
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PersonalLaptopSetup
But after the installations when I open the terminal nothing happens.
I also tried to launch freesurfer this way:
export FREESURFER_HOME=/Applications/freesurfer
source $FREESURFER_HOME/SetUpFreeSurfer.sh
If I do this I get:
command not found
command not found
command not found
Any advice on how to finally set up the software would be great help.
Thank you in anticipation.
Pablo
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Freesurfer experts, I am interested in running cortical surface area on longitudinal data from MRI scans and run multisubject comparisons (patients vs controls). I would like to ask you where could I find either a tutorial or a guide for performing such analysis. Also I am not familiar with freesurfer, so I am not sure which type of preprocessing should be undertaken.I would greatly appreciate your valuable help on this topic.Pablo
freesurfer@nmr.mgh.harvard.edu