I already uploaded this problem 2 days ago, reprocessing the subject to make sure about control points. However when I added the control points to the left hemisphere, the right hemisphere surface was changed severely. I used the command line, recon-all -autorecon2-cp -s subjectID. Could you tell me why does it occur and how to deal with it?
Best,
EK
what was the name of the file that you transferred? On Wed, 10 Oct 2012, EK Kim wrote:
I already uploaded this problem 2 days ago, reprocessing the subject to make sure about control points. However when I added the control points to the left hemisphere, the right hemisphere surface was changed severely. I used the command line, recon-all -autorecon2-cp -s subjectID. Could you tell me why does it occur and how to deal with it?
Best,
EK
Thank you for your answer. I'm not sure I understand your question right, but I just processed the file using following procedures. 1. recon-all -autorecon1 -nuintensitycor-3T (because mine was 3T) 2. skullstripping brain mask using gcuts 3. adding control points (only on the left hemisphere) 4. recon-all -autorecon2-cp and this figure was made by a commnad line, [tkmedit wm.mgz -aux brain.mgz -surfs]. Best, EK.
2012/10/10 Bruce Fischl fischl@nmr.mgh.harvard.edu
what was the name of the file that you transferred?
On Wed, 10 Oct 2012, EK Kim wrote:
I already uploaded this problem 2 days ago, reprocessing the subject to
make sure about control points. However when I added the control points to the left hemisphere, the right hemisphere surface was changed severely. I used the command line, recon-all -autorecon2-cp -s subjectID. Could you tell me why does it occur and how to deal with it?
Best,
EK
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If you upload the subject to our FTP site I will take a look Bruce
On Oct 10, 2012, at 9:29 PM, EK Kim ksea03@gmail.com wrote:
Thank you for your answer. I'm not sure I understand your question right, but I just processed the file using following procedures.
- recon-all -autorecon1 -nuintensitycor-3T (because mine was 3T)
- skullstripping brain mask using gcuts
- adding control points (only on the left hemisphere)
- recon-all -autorecon2-cp
and this figure was made by a commnad line, [tkmedit wm.mgz -aux brain.mgz -surfs]. Best, EK.
2012/10/10 Bruce Fischl fischl@nmr.mgh.harvard.edu what was the name of the file that you transferred?
On Wed, 10 Oct 2012, EK Kim wrote:
I already uploaded this problem 2 days ago, reprocessing the subject to make sure about control points. However when I added the control points to the left hemisphere, the right hemisphere surface was changed severely. I used the command line, recon-all -autorecon2-cp -s subjectID. Could you tell me why does it occur and how to deal with it?
Best,
EK
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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