Dear experts, I am sorry for asking again.
I have some problems in running recon-all. Recon-all process was shut down with this error message
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
Manual Talairach alignment may be necessary, or
include the -notal-check flag to skip this test,
making sure the -notal-check flag follows -all
or -autorecon1 in the command string."
I guess this is because of low resolution or small size of images.
is it right? Thank you so much for you help in advance.
FYI, log file is attached.
Kyung
Probably not because of the voxel size. First, check the registration. If it looks ok, then you can re-run with -no-talcheck. If it does, not look good, then fix it and rerun.
On 12/28/17 6:15 PM, 박경일 wrote:
Dear experts, I am sorry for asking again.
I have some problems in running recon-all. Recon-all process was shut down with this error message
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
Manual Talairach alignment may be necessary, or
include the -notal-check flag to skip this test,
making sure the -notal-check flag follows -all
or -autorecon1 in the command string."
I guess this is because of low resolution or small size of images.
is it right? Thank you so much for you help in advance.
FYI, log file is attached.
Kyung
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks. Douglas But, I've never performed each step of FS. Could you explain in detail how to check the registration and re-run with -no-talcheck?
2018-01-01 6:53 GMT+09:00 Douglas Greve greve@nmr.mgh.harvard.edu:
Probably not because of the voxel size. First, check the registration. If it looks ok, then you can re-run with -no-talcheck. If it does, not look good, then fix it and rerun.
On 12/28/17 6:15 PM, 박경일 wrote:
Dear experts, I am sorry for asking again.
I have some problems in running recon-all. Recon-all process was shut down with this error message
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
Manual Talairach alignment may be necessary, or
include the -notal-check flag to skip this test,
making sure the -notal-check flag follows -all
or -autorecon1 in the command string."
I guess this is because of low resolution or small size of images.
is it right? Thank you so much for you help in advance.
FYI, log file is attached.
Kyung
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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It is on the wiki. Just do a search for talairach. Let us know if you still can't find it.
On 1/1/18 6:49 PM, 박경일 wrote:
Thanks. Douglas But, I've never performed each step of FS. Could you explain in detail how to check the registration and re-run with -no-talcheck?
2018-01-01 6:53 GMT+09:00 Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>:
Probably not because of the voxel size. First, check the registration. If it looks ok, then you can re-run with -no-talcheck. If it does, not look good, then fix it and rerun. On 12/28/17 6:15 PM, 박경일 wrote:Dear experts, I am sorry for asking again. I have some problems in running recon-all. Recon-all process was shut down with this error message ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string." I guess this is because of low resolution or small size of images. is it right? Thank you so much for you help in advance. FYI, log file is attached. Kyung _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.--
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Professor,
Department of Neurology, Seoul National University Hospital; Seoul National University Hospital Healthcare System Gangnam Center.
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