External Email - Use Caution
Dear FreeSurfer experts,
I am encountering the error below:
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
As suggested, I have visited the website and followed these steps (https://secure-web.cisco.com/1sysqwtJ3yrcNBi951zfg6ki_eIkKSA8LC8npRZ7GbT_BfH...). However, I cannot move the bars as indicated; plus, there are no T1.mgz generated and the surf folder is empty.
[cid:47451ebe-9ef9-4af4-8165-7a9c27bb0881]
Much appreciated if anyone could advise. Thank you very much,
Regards, Krystal
Tel.: +852 2255 5024 Fax: +852 2872 5828 Address: Room 304, 3/F, New Clinical Building, 102 Pokfulam Road, Hong Kong.
wow, that looks really bad. Does the volume look ok? No artifacts or major pathology? Also, you can use tkregisterfv instead of tkregister -- it is a nicer interface
On 4/3/2023 3:10 AM, Krystal Xiwing Yau wrote:
External Email - Use Caution
Dear FreeSurfer experts,
I am encountering the error below:
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
As suggested, I have visited the website and followed these steps (*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach https://secure-web.cisco.com/1sysqwtJ3yrcNBi951zfg6ki_eIkKSA8LC8npRZ7GbT_BfH8OW6r5mmYKrW2ROV76nVTVEFP0hPFtm9B8h_EPWyQciP5oQw7Lsdtc1saFDPy_JVaRph39xsR5BpGLVZT2LO-0QjtSQAWyEz-QqjXwCTjwaF0S229M4eQO7TnQV9IrPQ8sV2OvouXxzNLTbK6WNzVCYbiViPfv_x-SLHp-k3flCVVV98dF_a0MXplKBtmwKEBYa5cf5sGsXGNSKPgYo0_XlHl2k1sK_hxz24lMKxc30ESkSSUeXg7eK_QQDmESjh5tfF-eb70eYqnqUVGN9T9bDNNuvGJw0r8x0XqFnA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTalairach). However, I cannot move the bars as indicated; plus, there are no T1.mgz generated and the surf folder is empty.
Much appreciated if anyone could advise. Thank you very much,
Regards, Krystal
Tel.: +852 2255 5024 Fax: +852 2872 5828 Address: Room 304, 3/F, New Clinical Building, 102 Pokfulam Road, Hong Kong.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear to FreeSurfer expert,
Thank you for your suggestion. I tried inputting below command but it said that no wm found... so I took out --surf orig, still nothing showed up.
tkregisterfv --s tal_before --fstal --surf orig
Because of that, I used tkregister2 instead for another attempt.
The T1 and FLAIR images look fine to me. Below are the screenshots for your reference:
T1.nii [cid:fd253514-83ac-43e2-b511-b28eed287d7f] FLAIR.nii[cid:59ac1007-4687-4d97-ac2f-099e3c696277]
Please kindly advise. Thank you.
Yours sincerely, Krystal
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@MGH.HARVARD.EDU Sent: 03 April 2023 22:12:20 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] [FreeSurfer] error in talairach_afd
wow, that looks really bad. Does the volume look ok? No artifacts or major pathology? Also, you can use tkregisterfv instead of tkregister -- it is a nicer interface
On 4/3/2023 3:10 AM, Krystal Xiwing Yau wrote:
External Email - Use Caution
Dear FreeSurfer experts,
I am encountering the error below:
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
As suggested, I have visited the website and followed these steps (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1Q76G5EQYAAjtKQMuKPYIiqhOG4QTWE1JieKUZceCc5SBZO...https://secure-web.cisco.com/1sysqwtJ3yrcNBi951zfg6ki_eIkKSA8LC8npRZ7GbT_BfH8OW6r5mmYKrW2ROV76nVTVEFP0hPFtm9B8h_EPWyQciP5oQw7Lsdtc1saFDPy_JVaRph39xsR5BpGLVZT2LO-0QjtSQAWyEz-QqjXwCTjwaF0S229M4eQO7TnQV9IrPQ8sV2OvouXxzNLTbK6WNzVCYbiViPfv_x-SLHp-k3flCVVV98dF_a0MXplKBtmwKEBYa5cf5sGsXGNSKPgYo0_XlHl2k1sK_hxz24lMKxc30ESkSSUeXg7eK_QQDmESjh5tfF-eb70eYqnqUVGN9T9bDNNuvGJw0r8x0XqFnA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTalairach). However, I cannot move the bars as indicated; plus, there are no T1.mgz generated and the surf folder is empty.
[cid:part1.C8se0pt8.Aa2t0Yhj@mgh.harvard.edu]
Much appreciated if anyone could advise. Thank you very much,
Regards, Krystal
Tel.: +852 2255 5024 Fax: +852 2872 5828 Address: Room 304, 3/F, New Clinical Building, 102 Pokfulam Road, Hong Kong.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1SD2pCMCYRCUyC-91pSVoCxq1Jeu0sh6DiG98KNSALCmX19...
It looks like a lot of signal outside the head. I can't tell how intense it is, but that could easily throw off the registration
On 4/3/2023 9:45 PM, Krystal Xiwing Yau wrote:
External Email - Use Caution
Dear to FreeSurfer expert,
Thank you for your suggestion. I tried inputting below command but it said that no wm found... so I took out --surf orig, still nothing showed up.
tkregisterfv --s tal_before --fstal --surf orig
Because of that, I used tkregister2 instead for another attempt.
The T1 and FLAIR images look fine to me. Below are the screenshots for your reference:
*_T1.nii_* _*FLAIR.nii*_
Please kindly advise. Thank you.
Yours sincerely, Krystal
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@MGH.HARVARD.EDU *Sent:* 03 April 2023 22:12:20 *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] [FreeSurfer] error in talairach_afd wow, that looks really bad. Does the volume look ok? No artifacts or major pathology? Also, you can use tkregisterfv instead of tkregister -- it is a nicer interface
On 4/3/2023 3:10 AM, Krystal Xiwing Yau wrote:
External Email - Use Caution
Dear FreeSurfer experts,
I am encountering the error below:
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
As suggested, I have visited the website and followed these steps (*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach https://secure-web.cisco.com/1sysqwtJ3yrcNBi951zfg6ki_eIkKSA8LC8npRZ7GbT_BfH8OW6r5mmYKrW2ROV76nVTVEFP0hPFtm9B8h_EPWyQciP5oQw7Lsdtc1saFDPy_JVaRph39xsR5BpGLVZT2LO-0QjtSQAWyEz-QqjXwCTjwaF0S229M4eQO7TnQV9IrPQ8sV2OvouXxzNLTbK6WNzVCYbiViPfv_x-SLHp-k3flCVVV98dF_a0MXplKBtmwKEBYa5cf5sGsXGNSKPgYo0_XlHl2k1sK_hxz24lMKxc30ESkSSUeXg7eK_QQDmESjh5tfF-eb70eYqnqUVGN9T9bDNNuvGJw0r8x0XqFnA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTalairach). However, I cannot move the bars as indicated; plus, there are no T1.mgz generated and the surf folder is empty.
Much appreciated if anyone could advise. Thank you very much,
Regards, Krystal
Tel.: +852 2255 5024 Fax: +852 2872 5828 Address: Room 304, 3/F, New Clinical Building, 102 Pokfulam Road, Hong Kong.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas N. Greve -
Krystal Xiwing Yau