I am having a problem others have had before, but that I can't seem to see any resolution to in the archives. When I open tksurfer I can't use my keyboard to input anything. I don't get any errors, it just doesn't let me type or delete anything, making it next to impossible to use.
I'm running Freesurfer4.5.0 on linux - Red Hat 4.1.2-48 (Centos 5.5)
I checked my .cshrc file and couldn't find any issues there. Any other help please?
Katie
Hi Katie,
do you see any errors in the window that you typed the tksurfer command? Bruce On Mon, 26 Jul 2010, Katie Bettencourt wrote:
I am having a problem others have had before, but that I can't seem to see any resolution to in the archives. When I open tksurfer I can't use my keyboard to input anything. I don't get any errors, it just doesn't let me type or delete anything, making it next to impossible to use.
I'm running Freesurfer4.5.0 on linux - Red Hat 4.1.2-48 (Centos 5.5)
I checked my .cshrc file and couldn't find any issues there. Any other help please?
Katie
Nope, all I get is a "Warning: No colortable found!"
Katie
On Mon, Jul 26, 2010 at 3:34 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Katie,
do you see any errors in the window that you typed the tksurfer command? Bruce
On Mon, 26 Jul 2010, Katie Bettencourt wrote:
I am having a problem others have had before, but that I can't seem to see
any resolution to in the archives. When I open tksurfer I can't use my keyboard to input anything. I don't get any errors, it just doesn't let me type or delete anything, making it next to impossible to use.
I'm running Freesurfer4.5.0 on linux - Red Hat 4.1.2-48 (Centos 5.5)
I checked my .cshrc file and couldn't find any issues there. Any other help please?
Katie
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
hmmm, the only time I've seen this happen is when there's a version mismatch for opengl or tcl or something. Nick: any ideas? On Tue, 27 Jul 2010, Katie Bettencourt wrote:
Nope, all I get is a "Warning: No colortable found!"
Katie
On Mon, Jul 26, 2010 at 3:34 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Katie,
do you see any errors in the window that you typed the tksurfer command? Bruce
On Mon, 26 Jul 2010, Katie Bettencourt wrote:
I am having a problem others have had before, but that I can't seem to see
any resolution to in the archives. When I open tksurfer I can't use my keyboard to input anything. I don't get any errors, it just doesn't let me type or delete anything, making it next to impossible to use.
I'm running Freesurfer4.5.0 on linux - Red Hat 4.1.2-48 (Centos 5.5)
I checked my .cshrc file and couldn't find any issues there. Any other help please?
Katie
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
are there any tcl vars defined in your enviro? in other words, typing this:
env | grep TCL
should turn-up nothing. if some other tcl/tk libs are active, then that could be the source of the problem.
n.
On Tue, 2010-07-27 at 17:00 -0400, Bruce Fischl wrote:
hmmm, the only time I've seen this happen is when there's a version mismatch for opengl or tcl or something. Nick: any ideas? On Tue, 27 Jul 2010, Katie Bettencourt wrote:
Nope, all I get is a "Warning: No colortable found!"
Katie
On Mon, Jul 26, 2010 at 3:34 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Katie,
do you see any errors in the window that you typed the tksurfer command? Bruce
On Mon, 26 Jul 2010, Katie Bettencourt wrote:
I am having a problem others have had before, but that I can't seem to see
any resolution to in the archives. When I open tksurfer I can't use my keyboard to input anything. I don't get any errors, it just doesn't let me type or delete anything, making it next to impossible to use.
I'm running Freesurfer4.5.0 on linux - Red Hat 4.1.2-48 (Centos 5.5)
I checked my .cshrc file and couldn't find any issues there. Any other help please?
Katie
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
All that gives me is FSLTCLSH=/usr/local/fsl/bin/fsltclsh
Should I get rid of that line then?
Kaite
On Tue, Jul 27, 2010 at 5:20 PM, Nick Schmansky nicks@nmr.mgh.harvard.eduwrote:
are there any tcl vars defined in your enviro? in other words, typing this:
env | grep TCL
should turn-up nothing. if some other tcl/tk libs are active, then that could be the source of the problem.
n.
On Tue, 2010-07-27 at 17:00 -0400, Bruce Fischl wrote:
hmmm, the only time I've seen this happen is when there's a version mismatch for opengl or tcl or something. Nick: any ideas? On Tue, 27 Jul 2010, Katie Bettencourt wrote:
Nope, all I get is a "Warning: No colortable found!"
Katie
On Mon, Jul 26, 2010 at 3:34 PM, Bruce Fischl <
fischl@nmr.mgh.harvard.edu>wrote:
Hi Katie,
do you see any errors in the window that you typed the tksurfer
command?
Bruce
On Mon, 26 Jul 2010, Katie Bettencourt wrote:
I am having a problem others have had before, but that I can't seem
to see
any resolution to in the archives. When I open tksurfer I can't use
my
keyboard to input anything. I don't get any errors, it just doesn't
let
me type or delete anything, making it next to impossible to use.
I'm running Freesurfer4.5.0 on linux - Red Hat 4.1.2-48 (Centos 5.5)
I checked my .cshrc file and couldn't find any issues there. Any
other
help please?
Katie
The information in this e-mail is intended only for the person to whom
it
is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to
you in
error but does not contain patient information, please contact the sender
and
properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Ok, I tried to unset the FSLTCLSH variable (which is the only one that came up when I grep TCL) to see if that allowed me to use keyboard input with tksurfer, but it didn't work.
I really need to be able to use the keyboard with tksurfer so that I can save label files and rgbs, etc. Is there any way I can get this fixed? Please?
Katie
Hi Katie, can you replicate this problem on a laptop? If so, maybe you want to swing by MGH with it and we can take a look? There are no errors when tksurfer starts? Bruce On Wed, 4 Aug 2010, Katie Bettencourt wrote:
Ok, I tried to unset the FSLTCLSH variable (which is the only one that came up when I grep TCL) to see if that allowed me to use keyboard input with tksurfer, but it didn't work.
I really need to be able to use the keyboard with tksurfer so that I can save label files and rgbs, etc. Is there any way I can get this fixed? Please?
Katie
Nope, no errors when tksurfer starts, and I've tried running it with both my own data/folder and with the tutorial data/folders, and have the same problem. I don't currently have freesurfer installed on a laptop, and the only laptop I have access to is a mac (whereas I am using linux for most of my analysis). I can see what happens if I try installing it on the mac and see if it has the same problem, but I assume it's somehow specific to my linux machine if others aren't having the same problem.
Katie
On Wed, Aug 4, 2010 at 3:19 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Katie, can you replicate this problem on a laptop? If so, maybe you want to swing by MGH with it and we can take a look? There are no errors when tksurfer starts? Bruce
On Wed, 4 Aug 2010, Katie Bettencourt wrote:
Ok, I tried to unset the FSLTCLSH variable (which is the only one that
came up when I grep TCL) to see if that allowed me to use keyboard input with tksurfer, but it didn't work.
I really need to be able to use the keyboard with tksurfer so that I can save label files and rgbs, etc. Is there any way I can get this fixed? Please?
Katie
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
We had exactly that problem on machines running RedHat 5, but it was solved by reinstalling with the latest CentOS.
From: kcrum@bu.edu Date: Wed, 4 Aug 2010 15:44:52 -0400 To: fischl@nmr.mgh.harvard.edu CC: freesurfer@nmr.mgh.harvard.edu; nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] keyboard problem in freesurfer
Nope, no errors when tksurfer starts, and I've tried running it with both my own data/folder and with the tutorial data/folders, and have the same problem. I don't currently have freesurfer installed on a laptop, and the only laptop I have access to is a mac (whereas I am using linux for most of my analysis). I can see what happens if I try installing it on the mac and see if it has the same problem, but I assume it's somehow specific to my linux machine if others aren't having the same problem.
Katie
On Wed, Aug 4, 2010 at 3:19 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Katie,
can you replicate this problem on a laptop? If so, maybe you want to swing by MGH with it and we can take a look? There are no errors when tksurfer starts?
Bruce
On Wed, 4 Aug 2010, Katie Bettencourt wrote:
Ok, I tried to unset the FSLTCLSH variable (which is the only one that came
up when I grep TCL) to see if that allowed me to use keyboard input with
tksurfer, but it didn't work.
I really need to be able to use the keyboard with tksurfer so that I can
save label files and rgbs, etc. Is there any way I can get this fixed?
Please?
Katie
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
thanks Don,
Katie: what OS are you running?
Bruce On Wed, 4 Aug 2010, Don Hagler wrote:
We had exactly that problem on machines running RedHat 5, but it was solved by reinstalling with the latest CentOS.
From: kcrum@bu.edu Date: Wed, 4 Aug 2010 15:44:52 -0400 To: fischl@nmr.mgh.harvard.edu CC: freesurfer@nmr.mgh.harvard.edu; nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] keyboard problem in freesurfer
Nope, no errors when tksurfer starts, and I've tried running it with both my own data/folder and with the tutorial data/folders, and have the same problem. I don't currently have freesurfer installed on a laptop, and the only laptop I have access to is a mac (whereas I am using linux for most of my analysis). I can see what happens if I try installing it on the mac and see if it has the same problem, but I assume it's somehow specific to my linux machine if others aren't having the same problem.
Katie
On Wed, Aug 4, 2010 at 3:19 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Katie,
can you replicate this problem on a laptop? If so, maybe you want to swing by MGH with it and we can take a look? There are no errors when tksurfer starts?
Bruce
On Wed, 4 Aug 2010, Katie Bettencourt wrote:
Ok, I tried to unset the FSLTCLSH variable (which is the only one that came
up when I grep TCL) to see if that allowed me to use keyboard input with
tksurfer, but it didn't work.
I really need to be able to use the keyboard with tksurfer so that I can
save label files and rgbs, etc. Is there any way I can get this fixed?
Please?
Katie
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Centos 5.5, which seems to be the newest one. I guess I could try reinstalling it.
Katie
On Thu, Aug 5, 2010 at 9:40 AM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
thanks Don,
Katie: what OS are you running?
Bruce
On Wed, 4 Aug 2010, Don Hagler wrote:
We had exactly that problem on machines running RedHat 5, but it was solved by reinstalling with the latest CentOS.
From: kcrum@bu.edu Date: Wed, 4 Aug 2010 15:44:52 -0400 To: fischl@nmr.mgh.harvard.edu CC: freesurfer@nmr.mgh.harvard.edu; nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] keyboard problem in freesurfer
Nope, no errors when tksurfer starts, and I've tried running it with both my own data/folder and with the tutorial data/folders, and have the same problem. I don't currently have freesurfer installed on a laptop, and the only laptop I have access to is a mac (whereas I am using linux for most of my analysis). I can see what happens if I try installing it on the mac and see if it has the same problem, but I assume it's somehow specific to my linux machine if others aren't having the same problem.
Katie
On Wed, Aug 4, 2010 at 3:19 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Katie,
can you replicate this problem on a laptop? If so, maybe you want to swing by MGH with it and we can take a look? There are no errors when tksurfer starts?
Bruce
On Wed, 4 Aug 2010, Katie Bettencourt wrote:
Ok, I tried to unset the FSLTCLSH variable (which is the only one that came
up when I grep TCL) to see if that allowed me to use keyboard input with
tksurfer, but it didn't work.
I really need to be able to use the keyboard with tksurfer so that I can
save label files and rgbs, etc. Is there any way I can get this fixed?
Please?
Katie
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Don Hagler -
Katie Bettencourt -
Nick Schmansky