Hi Bruce

I tried and still get the same error. Would this mean a space issue? I'm not sure how this is possible as I'm working off a 2Tb drive

trisanna@kaplan:~$ mri_convert ./tmp.mri_nu_correct.mni.1798/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert.bin ./tmp.mri_nu_correct.mni.1798/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.1798/nu1.mnc... mincRead(): can't find file ./tmp.mri_nu_correct.mni.1798/nu1.mnc

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Fri, Feb 24, 2017 at 9:45 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

Hi Trisanna

are you sure you aren't running out of disk space? If not, what happens when you run the mri_convert command directly on the command line?

cheers Bruce On Thu, 23 Feb 2017, Trisanna Sprung-Much wrote:

...

Hi All

I am trying to run a subject in 6.0 (it ran perfectly well in 5.3) and

it stops when

...

trying to transform to the "conformed" space. I get the following error

after about a

...

minute. I have not seen this error before.

mri_convert ./tmp.mri_nu_correct.mni.2860/nu1.mnc orig_nu.mgz --like

orig.mgz

...

--conform mri_convert.bin ./tmp.mri_nu_correct.mni.2860/nu1.mnc orig_nu.mgz

--like orig.mgz

...

--conform ncopen: filename "./tmp.mri_nu_correct.mni.2860/nu1.mnc": Not a netCDF

file

...

miopen: MINC package entry point Error opening ./tmp.mri_nu_correct.mni.2860/nu1.mnc mincRead(): error reading volume from file ./tmp.mri_nu_correct.mni.2860/

nu1.mnc

...

$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.2860/nu1.mnc... Linux kaplan 3.13.0-105-generic #152-Ubuntu SMP Fri Dec 2 15:37:11 UTC

2016 x86_64

...

x86_64 x86_64 GNU/Linux

recon-all -s icbm-131 exited with ERRORS at Thu Feb 23 11:40:53 EST 2017

To report a problem, see http://surfer.nmr.mgh.harvard.

edu/fswiki/BugReporting

...

Any ideas?

Best

Trisanna

Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology

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