External Email - Use Caution
Dear Freesurfer's experts,
I have run recon-all all to one subject with fmriprep.
The work finished without errors. However, after inspecting the results, I have seen that there are some *grey regions* (mainly frontal and temporal ones) that have not been fully covered.
I wonder how I could proceed in order to improve the segmentation.
Kind regards, Rosie
External Email - Use Caution
Here is what I am referring to:
On Mon, Jun 14, 2021 at 7:47 PM Rosalia Dacosta Aguayo rdacostaa@gmail.com wrote:
Dear Freesurfer's experts,
I have run recon-all all to one subject with fmriprep.
The work finished without errors. However, after inspecting the results, I have seen that there are some *grey regions* (mainly frontal and temporal ones) that have not been fully covered.
I wonder how I could proceed in order to improve the segmentation.
Kind regards, Rosie
It looks like the data are fairly low quality. This will require some manual intervention (control points, fixing topologogical errors, etc). See our wiki on manual interventions
On 6/15/2021 10:52 AM, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
Here is what I am referring to:
On Mon, Jun 14, 2021 at 7:47 PM Rosalia Dacosta Aguayo <rdacostaa@gmail.com mailto:rdacostaa@gmail.com> wrote:
Dear Freesurfer's experts, I have run recon-all all to one subject with fmriprep. The work finished without errors. However, after inspecting the results, I have seen that there are some *grey regions* (mainly frontal and temporal ones) that have not been fully covered. I wonder how I could proceed in order to improve the segmentation. Kind regards, Rosie
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Douglas,
Whay do you exactly mean by low quality data? As far as I have been told, is high. I would like to know so I cam discuss it further with the engineers as we are at the very beggining of the acquisition.
Kind regards, Rosie
El jue., 24 jun. 2021 17:10, Douglas N. Greve dgreve@mgh.harvard.edu escribió:
It looks like the data are fairly low quality. This will require some manual intervention (control points, fixing topologogical errors, etc). See our wiki on manual interventions
On 6/15/2021 10:52 AM, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionHere is what I am referring to:
On Mon, Jun 14, 2021 at 7:47 PM Rosalia Dacosta Aguayo < rdacostaa@gmail.com> wrote:
Dear Freesurfer's experts,
I have run recon-all all to one subject with fmriprep.
The work finished without errors. However, after inspecting the results, I have seen that there are some *grey regions* (mainly frontal and temporal ones) that have not been fully covered.
I wonder how I could proceed in order to improve the segmentation.
Kind regards, Rosie
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1etwqsyHnmfZsEhKpy7DXXAMlcAoIzwgTV5glV36LtvSHIv... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/1Tr88SrERL7Fd0OUfLDWjjmD1DdjAycNYd2czIAJ_GnnfzVc... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
It just looked noisy to me, but then again the images were pretty small
On 6/24/2021 12:00 PM, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
Hi Douglas,
Whay do you exactly mean by low quality data? As far as I have been told, is high. I would like to know so I cam discuss it further with the engineers as we are at the very beggining of the acquisition.
Kind regards, Rosie
El jue., 24 jun. 2021 17:10, Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> escribió:
It looks like the data are fairly low quality. This will require some manual intervention (control points, fixing topologogical errors, etc). See our wiki on manual interventions On 6/15/2021 10:52 AM, Rosalia Dacosta Aguayo wrote:External Email - Use Caution Here is what I am referring to: * * On Mon, Jun 14, 2021 at 7:47 PM Rosalia Dacosta Aguayo <rdacostaa@gmail.com <mailto:rdacostaa@gmail.com>> wrote: Dear Freesurfer's experts, I have run recon-all all to one subject with fmriprep. The work finished without errors. However, after inspecting the results, I have seen that there are some *grey regions* (mainly frontal and temporal ones) that have not been fully covered. I wonder how I could proceed in order to improve the segmentation. Kind regards, Rosie _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1etwqsyHnmfZsEhKpy7DXXAMlcAoIzwgTV5glV36LtvSHIvXzmFhFqOO-omHziK6OVLyok0O-lKL0Psc8HQV0nI5A8iZZoSx5hp1EOfDhUHHUPiS1UDKPRH-y0DR1Zx_f2pBbStU_tp6TwlE_HgqCWfHKuGvMoLjeT_Ndq0PA4qGj4dk5ryldxyrzaFaCD29z8axwX7YZfEipIGC5-o6dZ0y8uKMAuAyprJHY6GlEpMonPlzh0KvIe-jmXyhm8u8rNYNhUxRtUZlpH4_Cl5eKPQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1etwqsyHnmfZsEhKpy7DXXAMlcAoIzwgTV5glV36LtvSHIvXzmFhFqOO-omHziK6OVLyok0O-lKL0Psc8HQV0nI5A8iZZoSx5hp1EOfDhUHHUPiS1UDKPRH-y0DR1Zx_f2pBbStU_tp6TwlE_HgqCWfHKuGvMoLjeT_Ndq0PA4qGj4dk5ryldxyrzaFaCD29z8axwX7YZfEipIGC5-o6dZ0y8uKMAuAyprJHY6GlEpMonPlzh0KvIe-jmXyhm8u8rNYNhUxRtUZlpH4_Cl5eKPQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://www.massgeneralbrigham.org/complianceline <http://secure-web.cisco.com/1Tr88SrERL7Fd0OUfLDWjjmD1DdjAycNYd2czIAJ_GnnfzVcck3uydzHjWCJYSfuTBPBGJRlasRe3qx5FZ3T6PNQw_bioIFQPBc39_DdCIF4elDKLaRScULCaNDiSSoOhyOjVaqgPUXrO8OgAjPQXhOA3Be1yUYbngFH1tjSF7LCVGdkej4so-nwARic6CAQfyNRecQDP85HWuN4vx5EpG4xsJYkqSGpxS3ytqUZwUS-lZXtPzu-SguK7onbW6E8supqJax_Y35lgfbLH9yT_EA/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Douglas,
Could I share one T1 with you so you can closely inspect it and give me your opinion?
Kind regards, Rosie
El jue., 24 jun. 2021 18:22, Douglas N. Greve dgreve@mgh.harvard.edu escribió:
It just looked noisy to me, but then again the images were pretty small
On 6/24/2021 12:00 PM, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionHi Douglas,
Whay do you exactly mean by low quality data? As far as I have been told, is high. I would like to know so I cam discuss it further with the engineers as we are at the very beggining of the acquisition.
Kind regards, Rosie
El jue., 24 jun. 2021 17:10, Douglas N. Greve dgreve@mgh.harvard.edu escribió:
It looks like the data are fairly low quality. This will require some manual intervention (control points, fixing topologogical errors, etc). See our wiki on manual interventions
On 6/15/2021 10:52 AM, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionHere is what I am referring to:
On Mon, Jun 14, 2021 at 7:47 PM Rosalia Dacosta Aguayo < rdacostaa@gmail.com> wrote:
Dear Freesurfer's experts,
I have run recon-all all to one subject with fmriprep.
The work finished without errors. However, after inspecting the results, I have seen that there are some *grey regions* (mainly frontal and temporal ones) that have not been fully covered.
I wonder how I could proceed in order to improve the segmentation.
Kind regards, Rosie
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.edu*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/18QNYWV3yAPmvj8lOnCEFF09Q8fgN6J7bYZXTbd2BhjwX78... https://secure-web.cisco.com/1etwqsyHnmfZsEhKpy7DXXAMlcAoIzwgTV5glV36LtvSHIvXzmFhFqOO-omHziK6OVLyok0O-lKL0Psc8HQV0nI5A8iZZoSx5hp1EOfDhUHHUPiS1UDKPRH-y0DR1Zx_f2pBbStU_tp6TwlE_HgqCWfHKuGvMoLjeT_Ndq0PA4qGj4dk5ryldxyrzaFaCD29z8axwX7YZfEipIGC5-o6dZ0y8uKMAuAyprJHY6GlEpMonPlzh0KvIe-jmXyhm8u8rNYNhUxRtUZlpH4_Cl5eKPQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/18QNYWV3yAPmvj8lOnCEFF09Q8fgN6J7bYZXTbd2BhjwX78... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/1AiCOUSN1N_ysxokbmHOspnTrxtIjVFyNEFnrHM2d_nYhxMy... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
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Douglas N. Greve -
Rosalia Dacosta Aguayo